FMO10783.5prime Sequence
1144 bp (1044 high quality bases) assembled on 2011-11-14
> FMO10783.5prime
CAGTCGACATGACGGCTGAGACAGGAACAGCGCCTATGCCCACCTGGCTG
AGAGCAAATCTATTCGAAGAATTGCTAAGTAAACGTTACGGCGGCAATTA
TGCCGGAATCAAAAGTTTCAAGCCGGAAGCCGGGCTCAAGCCGGGAGAAA
ACTACTCCACAATTATGCTGCGCCTCAAGCTTGAAGTCGAACTGCAGGAT
CACACAATCGAAAATGTGAGCTATATGCTGAAGACTCCCTATGATTTCGA
GATGTATCGCGAGATTCTGAGGAAGAACAACATGTTTGCTGTGGAGAGGG
ATGTGTTCATTCAGGTGATTCCCGAGCTGGAACAGATGTACAAGGATGTG
GGCGTGGAGGTCAAGTTTGGGGCCAAGGCTTATGAAATCGACGCGCCCGA
TGATTACGTACTTCTGCAGGATCTGGGTCCTTTGGGTTTCAGGAACGTCG
ATCGCCTGGAGGGCCTAGACATGGTTCACACCAAGTGTGTTCTAAAGAAG
ATGGCCCAGTGGCATGCGGTATCGGCCACCAGGATCCATCTCAAGGGTCC
GTACCCCCAGAACTACTTGCAACCCACGTACGCCGATACCATGAAGGAGA
GCATCGAACAGGTGGCTGAAACCTTGGGCAAGTATTTCCTCAAGTGCCTG
CCACTCTACGAGGGTTACGAGGAGTACAGTGCGGCGGTTCACAAGATGCA
ACCTAAAATCGTCGACCTTATGTATGCTATGAACACGCCCGATCCGCATG
ACTTCAATGCTCTGAATCATGGAGATTGCTGGACCAGCAACATCATGTTT
AAGTACGAGGACGAGTCGCCCGAACCGATCGAGACATATTTCGTGGATCT
CCAACTGCCAAAGGTCACGAGCGTGGCATATGATCTGATCTATTTCCTCC
TGGCTCGACGAAATTCGAAATCCAATTGAGTCAGTTCGATTACTTCATCA
AGTACTACCACGATCACCTGTTCGAGCACTTGAGAATGCTGAACTACCCC
GAAGCAAAAACCCCCACGTTGGGGTCCTCCATACTCAGCCTATGAAATTG
ACGAGTTGGGATATCACATGCTTTATTTCCTGCCCACATGCTGCTCGAAT
CGACTGAAATGCATCTGGACGATCGTCACGAAACGAATGCAATG
FMO10783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10559-RB | 1435 | CG10559-RB | 13..1125 | 9..1113 | 5155 | 98.3 | Plus |
| CG10560-RA | 1367 | CG10560-RA | 370..574 | 315..519 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25315368..25315859 | 689..198 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 25314949..25315300 | 1039..690 | 1615 | 98.6 | Minus |
| 3R | 32079331 | 3R | 25315915..25316104 | 198..9 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 25319469..25319673 | 519..315 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:47 has no hits.
FMO10783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:40 Download gff for
FMO10783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 7..1086 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:45 Download gff for
FMO10783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 7..1086 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:10 Download gff for
FMO10783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 7..1086 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:10 Download gff for
FMO10783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25314927..25315300 | 690..1059 | 97 | <- | Minus |
| 3R | 25315368..25315858 | 199..689 | 100 | <- | Minus |
| 3R | 25315915..25316110 | 1..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:45 Download gff for
FMO10783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21140649..21141022 | 690..1059 | 97 | <- | Minus |
| arm_3R | 21141090..21141580 | 199..689 | 100 | <- | Minus |
| arm_3R | 21141637..21141832 | 1..198 | 97 | | Minus |
