Clone FMO10784 Report

Search the DGRC for FMO10784

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:84
Vector:pMK33-CFH-BD
Associated Gene/TranscriptObp50a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10784.5prime Sequence

569 bp (569 high quality bases) assembled on 2011-11-14

> FMO10784.5prime
CAGTCGACATGCGGACAGGGCGTATACTTGTTGCTTTGATTTTTCTAGGT
TTAATAATTCCCTTTCGGGCTGCAAAGTGCAGGGCAGCGCCCAAATCTGT
GCAAAATGTACACGTTTGTTGCTCAGCACCCCTGCCTAACTGGGGAGTTT
TCAACAGAGAGTGTCATAAATCGGCCATTCAAGCAAGTTGCCGTTTAGAT
TGCGATTTCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTGATCCAAGC
GAAAGTTCGACCCATGTTGGAGCGCGCCTTTTCCAACGAACCCACCATCG
ATGCATATGAGTCCAACTTTGCCAAATGTTCAACGGTGGTCAGGAGCAAA
TACCAGGAGCTATCTCCGCTGAGTCGTCAAAGCGACGCCTGTGACAGACA
CGCCCTCTTCTACAGCCTTTGTGCGTATGCTCGCTTGATTTTCACCTGTC
CGGACAAAATGTGGCAAAGAAATAACAGGATGTGCCAGGAGGCCAAGGCC
TATGCGAAAAAATGTCCTTGGCCAGCGCTAAAAATGTTTATGAGGAATAC
CGCAAGCTTTCTAGACCAT

FMO10784.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50a-RA 671 CG30067-RA 93..635 9..551 2715 100 Plus
Obp50a-RB 728 CG30067-RB 330..692 189..551 1815 100 Plus
Obp50a-RB 728 CG30067-RB 93..272 9..188 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14370367..14370729 551..189 1815 100 Minus
2R 25286936 2R 14370929..14371024 104..9 480 100 Minus
2R 25286936 2R 14370787..14370875 188..100 430 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:29:55 has no hits.

FMO10784.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:41 Download gff for FMO10784.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..638 9..555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:50 Download gff for FMO10784.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..638 9..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:13 Download gff for FMO10784.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..638 9..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:13 Download gff for FMO10784.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14370363..14370729 189..555 99 <- Minus
2R 14370787..14370870 105..188 100 <- Minus
2R 14370929..14371024 9..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:50 Download gff for FMO10784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10258292..10258375 105..188 100 <- Minus
arm_2R 10258434..10258529 9..104 100   Minus
arm_2R 10257868..10258234 189..555 99 <- Minus