FMO10789.5prime Sequence
916 bp (916 high quality bases) assembled on 2011-11-14
> FMO10789.5prime
CAGTCGACATGAGCCTGCTGCGCCTGCTTGGTGCCCTGCTGCTAGCCACA
TTCAATGGAATGGCTCCTGTGCCCGCGGAGGGACTGCACCTTTCCAACCT
GTCCGTCCCGCGCATTATCGACGTTGCCCAAAAGGCGAAACTCTTCTGCA
GCTACGCGATGGGCAATCGGACGCTGAACTCAGTCAAATGGTACAAGGAT
GGCCTCGAGTTTTTCAGATACTCGCCTCTAACACCGCCAACAACAAATTG
GTTCCCCGTTAAAGGTGTCACCATCGCCGACGGTTCGCCGCATTGCAATC
AATTCATCTGCAACGTGGAGCTGGAGAAGCTCACTGCCCACTCCTCCGGA
CAGTACAGGTGCGAGGTGTCCGGCGATGCGCCAGAGTTCAAGCTGATCGA
TCAGACGGCCAATATGACAGTCGGAGTGTTGCCCAAATTCGATCCGTTCA
TTTCGGGCGTGCGACACGCATACAAATATCACGACTATCTCGAGGCAAAT
TGCAGTACGGAGATGTCAAGTCCGATGGCCAAATTAACATGGTATATTAA
CAATAAGACGGCACCTGGGCACAGTTTGCAGCCGCAAATCAACGAAGTCT
CACGCAACGTGGACGGCTTTCACCTGTTCGCCAGCCACCTGCACTTGCGA
CTCCACCTGGACGACCAGCGGTTCATCAGCAAGAGCGAAATGTTGGAGCT
CCGCTGCACGGCGGACATCATGGGACTGGCAGCCGTTAGGCGGGAGAGCA
GGTACGGACCACCATCCTGGCGCTCAGGGATGCCGGCACCAAGCAGCGAC
TCACCGAGAACGGATCCTGCATGACCGGCCAACCAGCCTCCCTGGCCGCC
TGGCTCCTGAGCCTTGTCCACATCCTACGCTGGCACAGCACCCAGAGTGC
AAGCTTTCTAGACCAT
FMO10789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vc-RA | 2229 | CG14390-RA | 757..1647 | 9..898 | 4415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12746837..12747114 | 836..560 | 1340 | 99.6 | Minus |
3R | 32079331 | 3R | 12752418..12752632 | 426..212 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 12754631..12754791 | 217..57 | 790 | 99.4 | Minus |
3R | 32079331 | 3R | 12747429..12747565 | 561..425 | 685 | 100 | Minus |
3R | 32079331 | 3R | 12746618..12746683 | 898..833 | 330 | 100 | Minus |
3R | 32079331 | 3R | 12777746..12777795 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:19 has no hits.
FMO10789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:55 Download gff for
FMO10789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vc-RA | 358..1248 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:08 Download gff for
FMO10789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vc-RA | 757..1647 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:22 Download gff for
FMO10789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vc-RA | 757..1647 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:22 Download gff for
FMO10789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12746618..12746679 | 837..898 | 100 | <- | Minus |
3R | 12746837..12747113 | 561..836 | 99 | <- | Minus |
3R | 12747430..12747563 | 427..560 | 100 | <- | Minus |
3R | 12752418..12752626 | 218..426 | 100 | <- | Minus |
3R | 12754631..12754790 | 58..217 | 99 | <- | Minus |
3R | 12777747..12777795 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:08 Download gff for
FMO10789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8603469..8603517 | 9..57 | 100 | | Minus |
arm_3R | 8580353..8580512 | 58..217 | 99 | <- | Minus |
arm_3R | 8573152..8573285 | 427..560 | 100 | <- | Minus |
arm_3R | 8572340..8572401 | 837..898 | 100 | <- | Minus |
arm_3R | 8572559..8572835 | 561..836 | 99 | <- | Minus |
arm_3R | 8578140..8578348 | 218..426 | 100 | <- | Minus |