Clone FMO10789 Report

Search the DGRC for FMO10789

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:89
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10789.5prime Sequence

916 bp (916 high quality bases) assembled on 2011-11-14

> FMO10789.5prime
CAGTCGACATGAGCCTGCTGCGCCTGCTTGGTGCCCTGCTGCTAGCCACA
TTCAATGGAATGGCTCCTGTGCCCGCGGAGGGACTGCACCTTTCCAACCT
GTCCGTCCCGCGCATTATCGACGTTGCCCAAAAGGCGAAACTCTTCTGCA
GCTACGCGATGGGCAATCGGACGCTGAACTCAGTCAAATGGTACAAGGAT
GGCCTCGAGTTTTTCAGATACTCGCCTCTAACACCGCCAACAACAAATTG
GTTCCCCGTTAAAGGTGTCACCATCGCCGACGGTTCGCCGCATTGCAATC
AATTCATCTGCAACGTGGAGCTGGAGAAGCTCACTGCCCACTCCTCCGGA
CAGTACAGGTGCGAGGTGTCCGGCGATGCGCCAGAGTTCAAGCTGATCGA
TCAGACGGCCAATATGACAGTCGGAGTGTTGCCCAAATTCGATCCGTTCA
TTTCGGGCGTGCGACACGCATACAAATATCACGACTATCTCGAGGCAAAT
TGCAGTACGGAGATGTCAAGTCCGATGGCCAAATTAACATGGTATATTAA
CAATAAGACGGCACCTGGGCACAGTTTGCAGCCGCAAATCAACGAAGTCT
CACGCAACGTGGACGGCTTTCACCTGTTCGCCAGCCACCTGCACTTGCGA
CTCCACCTGGACGACCAGCGGTTCATCAGCAAGAGCGAAATGTTGGAGCT
CCGCTGCACGGCGGACATCATGGGACTGGCAGCCGTTAGGCGGGAGAGCA
GGTACGGACCACCATCCTGGCGCTCAGGGATGCCGGCACCAAGCAGCGAC
TCACCGAGAACGGATCCTGCATGACCGGCCAACCAGCCTCCCTGGCCGCC
TGGCTCCTGAGCCTTGTCCACATCCTACGCTGGCACAGCACCCAGAGTGC
AAGCTTTCTAGACCAT

FMO10789.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vc-RA 2229 CG14390-RA 757..1647 9..898 4415 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12746837..12747114 836..560 1340 99.6 Minus
3R 32079331 3R 12752418..12752632 426..212 1075 100 Minus
3R 32079331 3R 12754631..12754791 217..57 790 99.4 Minus
3R 32079331 3R 12747429..12747565 561..425 685 100 Minus
3R 32079331 3R 12746618..12746683 898..833 330 100 Minus
3R 32079331 3R 12777746..12777795 58..9 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:20:19 has no hits.

FMO10789.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:55 Download gff for FMO10789.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vc-RA 358..1248 9..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:08 Download gff for FMO10789.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vc-RA 757..1647 9..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:22 Download gff for FMO10789.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vc-RA 757..1647 9..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:22 Download gff for FMO10789.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12746618..12746679 837..898 100 <- Minus
3R 12746837..12747113 561..836 99 <- Minus
3R 12747430..12747563 427..560 100 <- Minus
3R 12752418..12752626 218..426 100 <- Minus
3R 12754631..12754790 58..217 99 <- Minus
3R 12777747..12777795 9..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:08 Download gff for FMO10789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8603469..8603517 9..57 100   Minus
arm_3R 8580353..8580512 58..217 99 <- Minus
arm_3R 8573152..8573285 427..560 100 <- Minus
arm_3R 8572340..8572401 837..898 100 <- Minus
arm_3R 8572559..8572835 561..836 99 <- Minus
arm_3R 8578140..8578348 218..426 100 <- Minus