Clone FMO10793 Report

Search the DGRC for FMO10793

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:93
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10586-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10793.5prime Sequence

849 bp (849 high quality bases) assembled on 2011-11-14

> FMO10793.5prime
CAGTCGACATGAAACGTCTTCTATTTCTCTTTCTGCTTGCTGGTATTTTA
ATAAACAATCATGCCCTGCAGCACAACGAGACCATTGACTTGAAAAAGTT
GGCCAAAATAGTGCTGCCTCCGGCTTATCAAACCCGTGTTATTGGTGGTC
GGGTGACCACCAACGCGAAATTGGGCGGATACCTGGTGGCAATGCGGTAC
TTCAATAATTTCATCTGCGGCGGTACTTTAATCCATGAGCTCATTGTCCT
CACGGCGGCGCACTGTTTTGAGGACCGAGCAGAAAAGGAAGCCTGGAGCG
TGGATGGTGGCATCTCCAGACTCAGCGAAAAAGGCATTCGTCGTCAAGTT
AAGCGCTTCATTAAGTCGGCCCAGTTTAAAATGGTCACCATGAACATGGA
CGTGGCTGTGGTGCTACTGAATCGACCGATGGTTGGAAAAAACATCGGAA
CTCTATCCTTGTGCAGTACGGCCTTGACTCCGGGACAGACAATGGACGTA
TCCGGCTGGGGAATGACAAATCCGGATGACGAGGGTCCGGGGCATATGCT
CCGCACGGTATCAGTACCTGTGATTGAAAAAAGAATATGCCGCGAAGCCT
ATCGGGAATCAGTCTCCATATCGGATAGCATGTTTTGTGCCTCAGTTTTG
GGAAAAAAGGATGCTTGCACCTACGACTCAGGAGGTCCCTTGGTTTACGA
AAAACAAGTCTGCGGCATTGTGTCCTTTGGGATCGGATGTGCGAGCAGGC
GTTATCCCGGTGTCTATACGGATGTTCATTACGTAAAGCCATTTATTGTA
AAAGGCATCAAGCTTTGCTCTCCCGTTCCAGGGCAAGCTTTCTAGACAT

FMO10793.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sems-RA 883 CG10586-RA 17..846 4..832 4110 99.8 Plus
CG11037-RA 913 CG11037-RA 705..868 657..819 315 80.6 Plus
CG10588-RB 3727 CG10588-RB 3510..3673 819..657 315 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20956126..20956734 612..4 3030 99.8 Minus
3L 28110227 3L 20955792..20956015 832..610 1070 99.6 Minus
3L 28110227 3L 20960467..20960606 796..657 295 80.7 Minus
3L 28110227 3L 20961623..20961765 772..630 280 79.7 Minus
Blast to na_te.dros performed 2014-11-27 20:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 1844..1873 44..15 114 86.7 Minus
G4 3856 G4 G4_DM 3856bp 2264..2311 53..6 113 75.5 Minus

FMO10793.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:57 Download gff for FMO10793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10586-RA 16..851 1..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:20 Download gff for FMO10793.5prime
Subject Subject Range Query Range Percent Splice Strand
Sems-RA 16..851 1..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:30 Download gff for FMO10793.5prime
Subject Subject Range Query Range Percent Splice Strand
Sems-RA 16..851 1..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:30 Download gff for FMO10793.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20955787..20956012 613..839 98 <- Minus
3L 20956126..20956735 1..612 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:20 Download gff for FMO10793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20948887..20949112 613..839 98 <- Minus
arm_3L 20949226..20949835 1..612 99   Minus