FMO10804.5prime Sequence
548 bp (548 high quality bases) assembled on 2011-11-17
> FMO10804.5prime
CAGTCGAAATGGACGGATTTATGATGGATATCATCAAGGGCATGTGCATC
ATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGACAAGAACAT
CCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCTGTTCAATA
AGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGACTCACCTGC
GTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGCAACGCCTA
CGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTACGATTCCA
TTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGCTGGAAAAC
CTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGAGGCATTAT
TCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCTGCGCAACG
ATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTTCTGCAATCGGCA
CGTGAACAACTCAAATGGTCCATTCTGAAGGCAAGCTTTCTAGACCAT
FMO10804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaCOP-RA | 694 | CG3948-RA | 39..560 | 9..530 | 2610 | 100 | Plus |
| zetaCOP-RC | 671 | CG3948-RC | 34..537 | 27..530 | 2520 | 100 | Plus |
| zetaCOP-RB | 1030 | CG3948-RB | 39..517 | 9..487 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16673057..16673425 | 394..26 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 16672452..16672545 | 487..394 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 16671798..16671844 | 530..484 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:21 has no hits.
FMO10804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:14 Download gff for
FMO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 30..560 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:01 Download gff for
FMO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 30..560 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:11 Download gff for
FMO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 30..560 | 1..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:11 Download gff for
FMO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16671798..16671842 | 486..530 | 100 | <- | Minus |
| 3L | 16672454..16672544 | 395..485 | 100 | <- | Minus |
| 3L | 16673057..16673424 | 27..394 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:01 Download gff for
FMO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16664898..16664942 | 486..530 | 100 | <- | Minus |
| arm_3L | 16665554..16665644 | 395..485 | 100 | <- | Minus |
| arm_3L | 16666157..16666524 | 27..394 | 100 | <- | Minus |
