FMO10805.5prime Sequence
491 bp (491 high quality bases) assembled on 2011-11-17
> FMO10805.5prime
CAGTCGACATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCAACATCTGC
AGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAGAAGGCGAA
TGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTGGCACGTGG
GCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGCACGGCCTC
AAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTCTCGGAATT
CGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCTAAGGCGTC
TGGCGCCCAAGGGCTCCAAGGCGGAGCTCCTCATGCTGGGCGATTTCGGA
CTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGAGCGTGGAGC
CGAGGGCTTTGAGACCGCCTATCAGCAGTGCGTGGTTGCCTGTGCCGCCT
TCATGAAAGAGCGCCTCCAGAAAGCAAGCTTTCTAGACCAT
FMO10805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-RB | 588 | CG33748-RB | 71..535 | 9..473 | 2325 | 100 | Plus |
| primo-1-RA | 1336 | CG33748-RA | 819..1283 | 9..473 | 2325 | 100 | Plus |
| primo-2-RC | 1336 | CG33747-RC | 819..1283 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13710308..13710659 | 390..39 | 1760 | 100 | Minus |
| 3R | 32079331 | 3R | 13710070..13710153 | 473..390 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1053..1120 | 153..220 | 105 | 65.2 | Plus |
FMO10805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:15 Download gff for
FMO10805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:05 Download gff for
FMO10805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:15 Download gff for
FMO10805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-2-RC | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:15 Download gff for
FMO10805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13710309..13710658 | 40..389 | 100 | <- | Minus |
| 3R | 13710060..13710153 | 390..482 | 95 | <- | Minus |
| 3R | 13710723..13710753 | 9..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:05 Download gff for
FMO10805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9535782..9535875 | 390..482 | 95 | <- | Minus |
| arm_3R | 9536031..9536380 | 40..389 | 100 | <- | Minus |
| arm_3R | 9536445..9536475 | 9..39 | 100 | | Minus |
