Clone FMO10812 Report

Search the DGRC for FMO10812

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:108
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17169-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10812.5prime Sequence

368 bp (368 high quality bases) assembled on 2011-11-17

> FMO10812.5prime
CAGTCGACATGCGATGGCAGTTGGCAATTATGTGGCTTTTCGCCTCCGCG
TTTGCAGTACCTTTCATAAAGTGGCGCCGCCAAATAGTTACGCCGAAGCA
CTTGATGGCACCACCTTTGTCACCCATCGCACAGGACAAGGTTGTGGTCA
CCCCGCAGAAGCTTAGAGAAGTGGCTGACTTTAAGGCCATGATCCAAAAG
GCCGTCGATGAGAACACTTACGTGGTGGCCGCTGCACCATCAAAGGATTT
TCTAGCGACACTGGGTGGAAATTGGGGAGCACCTATATCCTTGCCTCACT
CCTGGACCGCGCCAGCCTTTAATCTTACCTTTTTTTGGCATGGATTTGGC
GCAAGCTTTCTAGACCAT

FMO10812.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-RB 532 CG17169-RB 18..359 9..350 1695 99.7 Plus
CG17159-RF 4662 CG17159-RF 4259..4365 350..244 535 100 Minus
CG17162-RH 4590 CG17162-RH 4187..4293 350..244 535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23084689..23084926 9..246 1175 99.6 Plus
X 23542271 X 23085257..23085363 244..350 535 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:31:50 has no hits.

FMO10812.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:12 Download gff for FMO10812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 14..362 1..354 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:44 Download gff for FMO10812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 14..362 1..354 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:57 Download gff for FMO10812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 14..362 1..354 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:57 Download gff for FMO10812.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23084685..23084925 1..245 97 -> Plus
X 23085259..23085366 246..354 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:44 Download gff for FMO10812.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 63503..63743 1..245 97 -> Plus
XHet 64077..64184 246..354 98   Plus