FMO10817.5prime Sequence
964 bp (960 high quality bases) assembled on 2011-11-17
> FMO10817.5prime
CAGTCGACATGAGCGAACGGGGCAGCGGGGGAGCGGTGACGGGGGGTCGG
CATGCTCGCGTTAGTCCAACGCCAGGACGTGGCAGCAAGATTGCGTATAC
GCCGTGTCCGCGCTCCGAACCGCCGCAGGATCTGGCGCTTGCCGTTCCGC
CGCCGCCGCGCAATTGCCTGGCCATCCCGATGTCCTCACTGCAAACGGCC
AATGGACCCGGCACAAAAGTGAACTTTGGTGGCGGCGCCAACTCGGGAGT
CACACGAGCGGAACCAATCTCATTGGCCACCCTGGATCGCGACTGCTTCA
TCATTCCCGTGCACAGTGTGGACCGCTTCCTGCCAGCTGGCATTCCTCTG
CCCGCCTTAAGTGCCGATGGTAAGGCCACAAGCCCTCTAAGTGTCTTGGA
AGTCTCCGATCCGAAGCTGTGCATTCTGGTGCATTTGATGAGTCCCCTGG
AGGCCATCGATCCGGTAATGGAGTCGCCACTAGCGCATCCGCTGCTCAAG
CAGCGCTCCATTGCCGCCGAATTGGTGACCGAAGTGCAGCAGGCCAACAC
GGCAGTGGGCGGAATGCTGCTGGCCAACATGGAGAAGAGCTCTGAGTTCC
CCTTCATCTCGTACTACCTGATCAATACGCTGCAAACGGATCCTTCCAGC
TTCTATGCTGGCCTGCGCGTCTCCTCGCTGTCCAAGTTTGAGCCAAAGGC
CCTCAAATACACTGCCGCCCACACACTGGATCTGTATAGCGAGGTGGCTG
CCATTTGCCGGCCGCCGTTGGTTTTGCCCTCCAACGAGGTGGGCAGCTTC
AAGAAGTCGCAGACCGCGGCCACCGGCTACATTATTAGCGTGTTCAAGGT
TTCGAGGGCGACGATGGCGACGATTCGAAAGAACTGGCTCTACTGGAACC
GGAGCACGGATGTTGTACAGGTACCTGCCACGTGCCGCGGGCCTTGAGGC
GCATCCGCCCCTGC
FMO10817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42700-RJ | 4712 | CG42700-RJ | 518..1465 | 9..955 | 4625 | 99.5 | Plus |
| CG42700-RH | 2811 | CG42700-RH | 518..1465 | 9..955 | 4625 | 99.5 | Plus |
| CG42700-RC | 2164 | CG42700-RC | 518..1465 | 9..955 | 4625 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12296563..12296812 | 348..597 | 1235 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12280288..12280498 | 9..219 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 12297056..12297199 | 707..850 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 12296336..12296465 | 218..347 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 12296871..12296985 | 592..706 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 12297268..12297343 | 850..924 | 235 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:33:24 has no hits.
FMO10817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:21 Download gff for
FMO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 508..1470 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:39 Download gff for
FMO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 508..1470 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:46 Download gff for
FMO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 510..1472 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:46 Download gff for
FMO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12280280..12280498 | 1..219 | 98 | -> | Plus |
| 2R | 12296338..12296465 | 220..347 | 100 | -> | Plus |
| 2R | 12296563..12296806 | 348..591 | 100 | -> | Plus |
| 2R | 12296871..12296985 | 592..706 | 100 | -> | Plus |
| 2R | 12297056..12297197 | 707..848 | 100 | -> | Plus |
| 2R | 12297266..12297339 | 849..920 | 94 | -> | Plus |
| 2R | 12297515..12297555 | 921..964 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:39 Download gff for
FMO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8184771..8184844 | 849..920 | 94 | -> | Plus |
| arm_2R | 8185020..8185060 | 921..964 | 93 | | Plus |
| arm_2R | 8184068..8184311 | 348..591 | 100 | -> | Plus |
| arm_2R | 8184376..8184490 | 592..706 | 100 | -> | Plus |
| arm_2R | 8184561..8184702 | 707..848 | 100 | -> | Plus |
| arm_2R | 8167785..8168003 | 1..219 | 98 | -> | Plus |
| arm_2R | 8183843..8183970 | 220..347 | 100 | -> | Plus |
