FMO10827.5prime Sequence
743 bp (743 high quality bases) assembled on 2011-11-17
> FMO10827.5prime
CAGTCGACATGTTCATCCAAAGCTTCCTGTTGCTATTGGCGCTCAATTCC
CTGTCCGCAGGACCAGTAATCCGGCCGGAAGAACGCATTATCGGTGGACA
ACCCATTGGAATCGAGGAGGCACCATGGCAGGTGTCCATACAACGTGATG
GCAAACATTTATGCGGTGGCTCCATTTACAGCGCAGATATCATCATTACT
GCGGCCCATTGCGTCCAGGGCCAGGGATATCAAGTTCGGGCAGGATCCGC
CTTGAAGAACTCCAATGGAAGTGTTGTCGATGTGGCCGCTATAAGGACGC
ATGAGGGATTAGGAAACGACATCGCCATCGTGCGGCTAAGTAAGCCACTT
GAGTTCACAAACCAAGTTCAGCCCATTCCATTGGCCAAGACAAATCCCCC
GCCTGGATCGATTGCCTTCGTCTCTGGCTGGGGAAGTTCTTCTTATTACT
CACATCCCATCGATCTTCAAGGAGTAAACCTTTACATTCAATGGCCGTAC
TATTGTGGATTAACTGAACCGTCAAGAATATGCGCCGGATCTTTTGGAAG
GGCGGCTTGTAAAGGAGACTCTGGTGGACCGTTGGTGTTTGACCAACAAC
TTGTGGGTGTTGTATCCGGGGGTACAAAGGATTGCACGTATAGTTCAATC
TACACTAGTGTCCCATATTTCCGTGAATGGATCTTAAATGCTATCGATGA
AATAATGTCAGCGAATCGAAACAAAGCAAGCTTTCTAGACCAT
FMO10827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send2-RA | 774 | CG18125-RA | 35..751 | 9..725 | 3585 | 100 | Plus |
| CG17234-RA | 808 | CG17234-RA | 29..774 | 3..694 | 630 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14345938..14346654 | 725..9 | 3585 | 100 | Minus |
| 2L | 23513712 | 2L | 2253073..2253281 | 3..211 | 460 | 81.3 | Plus |
| 2L | 23513712 | 2L | 2253423..2253543 | 314..434 | 365 | 86.8 | Plus |
| 2L | 23513712 | 2L | 2253653..2253818 | 529..694 | 305 | 78.9 | Plus |
| 2L | 23513712 | 2L | 2253315..2253388 | 221..294 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:37 has no hits.
FMO10827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:27 Download gff for
FMO10827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18125-RA | 1..720 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:15 Download gff for
FMO10827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send2-RA | 26..760 | 1..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:19 Download gff for
FMO10827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send2-RA | 26..760 | 1..734 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:19 Download gff for
FMO10827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14345929..14346660 | 1..734 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:15 Download gff for
FMO10827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14345929..14346660 | 1..734 | 98 | | Minus |
