FMO10828.5prime Sequence
761 bp (761 high quality bases) assembled on 2011-11-17
> FMO10828.5prime
CAGTCGACATGCGAGGATTTCTGTTACTCTTACTCATTGCTTCCGTTTCG
GCAGCAAAATTGGGCTACAATTACCAAGCTGCTGCTGGCGACCGTCGTTT
TGCGGGACTCATCGATGCGGAGGCCACAGGATTCAGCTCCACATCTACGC
AGCAGCAGCAGCAGCAACAAGCGCAACAGGAGCTTGTGCAGCAGAACACG
CAACAACAGATTCCAGCTGCTGCGGATGAGTTCAGCAAGGAGTTCTACAC
CTACGCTGCACCGGAGGAGGAGTTTGCGGATCAGGAGGCTACCGAGCACA
TCGCCAGCATGCTGAAACGCAATCTCCGCGTGCTGTTCATCAAGTCGCCG
GAACACCAAGGTCTCACCAACGCAGCCCTCCAGTTGGCCAAACAGGCCAG
CGAGCAGCGGACGGCCATCTATGTGCTCAGCAAGCAGGCGGATGTGAGTC
AGTTGGCGCAGCGCCTGGCCAATGAGAATCAGGCCCAAAGCCCCAAGCCG
GAGGTGCACTTCGTCAAGTACCGCACCCCGGAGGATGCGGTGCGTGCCCA
GCAGCTCATTCAGCAGCAGTTCGACTCCTTGGGCGGCAGCTCCCGCAGCT
CGGACGAGGGTGTCGCCCCCGTTTTGGACTTTAGCTCAGCACCAGCGGCC
ATAAGCGTCCAGGAGCAGAATGAGGCCCAAAATCAGGTTCAGGCAGTAAC
TCCTCTCACAAAGTATTTGCCAGCGGCATTGCTGCGCAACAAGGCAAGCT
TTCTAGACCAT
FMO10828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 893 | CG14250-RA | 68..802 | 9..743 | 3675 | 100 | Plus |
| Tb-RA | 1031 | CG5480-RA | 614..694 | 494..574 | 180 | 81.5 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 758..802 | 494..538 | 180 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26692637..26693357 | 743..23 | 3605 | 100 | Minus |
| 3R | 32079331 | 3R | 17141471..17141596 | 620..495 | 180 | 76.2 | Minus |
| 3R | 32079331 | 3R | 26622752..26622796 | 538..494 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26624862..26624906 | 538..494 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26628151..26628195 | 538..494 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26630477..26630521 | 494..538 | 180 | 93.3 | Plus |
| 3R | 32079331 | 3R | 26632626..26632670 | 494..538 | 180 | 93.3 | Plus |
| 3R | 32079331 | 3R | 26657114..26657194 | 494..574 | 180 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:46 has no hits.
FMO10828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:28 Download gff for
FMO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 1..738 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:18 Download gff for
FMO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 59..808 | 1..752 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:22 Download gff for
FMO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 59..808 | 1..752 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:22 Download gff for
FMO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26692631..26693356 | 24..752 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:18 Download gff for
FMO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22518353..22519078 | 24..752 | 99 | <- | Minus |
