FMO10829.5prime Sequence
848 bp (848 high quality bases) assembled on 2011-11-17
> FMO10829.5prime
CAGTCGACATGCGTCAGTTCTCCGTAGTTCTTTGCCTGTGCCTCGCCGTT
TTGGCCAGAGCCGATAAACTCGGCTACAATTACCAACCGGTGGCCCACTC
TCCCTCCGGATTGAGCTTCCAGCCATCTGGATCGGCCAGTAGCGATGCAC
CCGCTTTCGCGCCTGCACCCAGTGAATCCTTTGGCCCCGGTCCCTCATCC
ATTGCTGATGCCCTGGAAGGATCTCAATCCGCTGCTGCCCCCAACTACGC
TGCTCCTCAGGCCCAACTCGAAAAGGAGTTCTTCACTTACACCGCCGACG
AGGGTGACTTCTACGACCCAGCTGCCTCCGACCGTGTTGCCAACGCCGTG
AACAAGGGACTCCGCGTGGTCTTCATCAAGGGACCCGAGAACCGCGGTCT
GGAGGATGCCGCTCTGGCTCTGGCCAAGCAGGCTGCCCAGCAGGAGACCG
CCATCTATGTCCTGAACAAGCAGGCTGACATTGGAGATCTGGCCAACAAG
CTGAACTCCATCCGCAACAACAACAACAACAAGCCCGAGGTGCACTTCGT
CAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGAGTGCAATTCAGG
GTCAGTACGATCAGTTGGGAGGATCTTCGCAAGCTCAAGATGGTGGAGTG
GCATCCACCCTGAACTTCGCTTCCCAGCCCGCTCCTGTTCAGGCTGCCAG
CAGCCAAGCGCCCGCCCAGTTCCTGCCCGCCTCCCAGCCCGAGGCTACTG
CACCCATCTCCTCGTATGTGCCACCTGCCACCCCAGGTAGCTCCTACTTG
CCCGCCAACATCCTGCGCCGCCTGCGTTTCGCAAGCTTTCTAGACCAT
FMO10829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlJ-RB | 908 | CG5471-RB | 37..860 | 7..830 | 4120 | 100 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 51..685 | 51..685 | 2650 | 94.5 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 423..824 | 273..674 | 1185 | 86.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26629954..26630777 | 7..830 | 4120 | 100 | Plus |
| 3R | 32079331 | 3R | 26628040..26628674 | 685..51 | 2650 | 94.5 | Minus |
| 3R | 32079331 | 3R | 26622652..26623053 | 674..273 | 1185 | 86.3 | Minus |
| 3R | 32079331 | 3R | 26619703..26620032 | 345..674 | 1080 | 88.5 | Plus |
| 3R | 32079331 | 3R | 26624762..26625163 | 674..273 | 1080 | 84.6 | Minus |
| 3R | 32079331 | 3R | 26632369..26632731 | 273..635 | 1035 | 85.7 | Plus |
| 3R | 32079331 | 3R | 26634052..26634449 | 228..625 | 955 | 82.7 | Plus |
| 3R | 32079331 | 3R | 26626168..26626447 | 625..346 | 710 | 83.6 | Minus |
| 3R | 32079331 | 3R | 26620813..26621063 | 613..363 | 385 | 76.9 | Minus |
| 3R | 32079331 | 3R | 26656944..26657062 | 360..478 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26640528..26640693 | 421..586 | 245 | 76.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:55 has no hits.
FMO10829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:28 Download gff for
FMO10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 1..825 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:22 Download gff for
FMO10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 30..869 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:26 Download gff for
FMO10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 30..869 | 1..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:26 Download gff for
FMO10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26629947..26630786 | 1..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:22 Download gff for
FMO10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22455669..22456508 | 1..841 | 99 | | Plus |
