FMO10830.5prime Sequence
863 bp (863 high quality bases) assembled on 2011-11-17
> FMO10830.5prime
CAGTCGACATGTTTCTTGTGGCAAGAAGTTTTGCCCCAATTAACTCGGGG
ACAAGAAGTCATTTTGGATTCAATTATGATAAACAGGGAAGGGATTGGAA
TGTAAAGTGCGGTGAAAGACAATCGCCCATTGCACTGTGGTCATGCAATG
CCATTACATGTAATGTACCCAAACTGAAGTTCCTGAATTACCATAAGAGC
CTGTGCGATCCTTTATCCGTGATCAACAATGGGCTAACAGTTCTCATGCG
GATACCCAAGACCGTCGACGGCAGTCGGCCATCCCTTTGCATCAGTACTG
AAGGCCAACAGGTCTTCGAGGCCGACCAGTTGCACTTTCACTGGGGCTCC
GCACTGAGCAAGGGATCGGAGCACTGCTTGGATGGCAACTATTACGATGG
GGAGGTGCACATCGTTCACAAGAATGCCAGTTACAAAAGCAACAAGGAGG
CCGGTCTGCAGCCGAATGGCTTTGCGGTTTTGGCCCTGTTCATAAGGAAC
CTTGAGGATCCGAACATCGAGACGCCAGCTATGAACATGATCTGTAAACA
GGTATCCAGCATAACTAAGTTGGATGATTCGTGTCCTCTGGAGGACAGCA
TGGCTTTGCAGGACCTTTTTGCTAGCATAGACAGCCAAAAATACTTCACC
TACCAAGGTTCGCTTACTACTCCTCCCTGTGCCGAGGCAGTCATCTGGTT
TGTTTTCCCGACTCCTCTCGATGTTCCCAAGGAGCTGTGGAAGCACTTTT
GGCAACTGAGGGACTCTCGTGACCAGCGCGTCCTTAACACCTACAGGGAA
CTGCAAGATGGCCATGACCGACCAGTTTATAGAAGTAAAGCAAAAGCAAG
CTTTCTAGACCAT
FMO10830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10899-RA | 961 | CG10899-RA | 46..884 | 7..845 | 4195 | 100 | Plus |
| CG10899-RC | 972 | CG10899-RC | 46..895 | 7..845 | 4075 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24856954..24857311 | 507..150 | 1790 | 100 | Minus |
| 3R | 32079331 | 3R | 24856747..24856901 | 659..505 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 24857371..24857514 | 150..7 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 24856460..24856568 | 845..737 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 24856617..24856698 | 737..656 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:35:05 has no hits.
FMO10830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:29 Download gff for
FMO10830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 41..896 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:26 Download gff for
FMO10830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 41..896 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:30 Download gff for
FMO10830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 41..896 | 1..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:30 Download gff for
FMO10830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24856448..24856567 | 738..858 | 95 | <- | Minus |
| 3R | 24856617..24856696 | 658..737 | 100 | <- | Minus |
| 3R | 24856749..24856899 | 507..657 | 100 | <- | Minus |
| 3R | 24856955..24857311 | 150..506 | 100 | <- | Minus |
| 3R | 24857372..24857519 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:26 Download gff for
FMO10830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20682170..20682289 | 738..858 | 95 | <- | Minus |
| arm_3R | 20682339..20682418 | 658..737 | 100 | <- | Minus |
| arm_3R | 20682471..20682621 | 507..657 | 100 | <- | Minus |
| arm_3R | 20682677..20683033 | 150..506 | 100 | <- | Minus |
| arm_3R | 20683094..20683241 | 1..149 | 97 | | Minus |
