Clone FMO10832 Report

Search the DGRC for FMO10832

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:108
Well:32
Vector:pMK33-CFH-BD
Associated Gene/Transcriptacj6-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10832.5prime Sequence

1119 bp (1004 high quality bases) assembled on 2011-11-17

> FMO10832.5prime
CAGTCGACATGACAATGTCGATGTATTCGACGACGGATAAAATGAAAATG
TCAGCGCCCAGTTGTTTTCCAGGACGCTACAGTCCCTCCTATCGAAGTTC
GGAGCAAATGCGTCGCTGCATGCCAAATCCATCTGGTGATATCTTCGCGG
GCATCAACGATGGAATCCTCAGCAGAGCGGAGGCCCTGGCCGCCGTCGAC
ATCCAGAAGCACCAAGCCCAGCATGTACATAGCCAAATGCCCTCCCAAAT
TAAGCACGACGTCATGTACCATCATCACTCCATGAGTGGGCCTCCCCAGC
GTCCGTTGCAGGAAAATCCTTTTTCTCGACAGATGCACCACTCGATGGAC
CAACTGGACATGCTGGATCCGACGGGCTCGATGACCACACTGGCGCCCAT
CTCGGAGTCGCCGCTAACGCCCACACACCAACACCTGCACGGTTCCTATC
ACAGCATGAATCACATGATGAGCCACCACCATCCGGGCACGTTAAGTGGC
CATACGGGGGGACATCATGGACACTCGGCGGTACATCATCCTGTTATCAC
GGCGGCAGTGGCTGCCGCTGGCCTGCATCCCGACACAGATACCGATCCTC
GCGAGCTGGAGGCGTTTGCGGAGCGATTCAAGCAGCGGCGCATCAAGCTG
GGTGTCACGCAGGCGGACGTGGGCAAAGCCCTGGCCAATCTCAAGTTACC
TGGCGTCGGAGCGCTGTCGCAGAGCACGATCTGTCGATTCGAGAGCCTGA
CCCTGTCCCACAACAACATGATCGCCCTTAAGCCCATCCTGCAGCGTGGC
TCGAGGAGGCCGAGGCGCACGCGAAAACAAGCGGCGCGATCCGGATGCGC
CCAGTGTCCTGCCGGCGGGCGAAAAGAAAAGGACTTCCATTGCGGCACCT
GAAAAGCGTTCTCTGGAAGCCTACTTCGCCGTCCAGCCGAGCCATCCGGT
GAGAAAATCGCAGCGATGCCGAAAGCTGGATTTGAAGAAAACGTGGTGGG
CCGTCTGTTCTGCATCACGTCAAAACAAAAACGTATAAGTAAGTATGTAC
ACATCATGACTGCCACGTTCCGCGGAATTGATCCCAAGCTTCTGACATTC
GTGGACGCGGCCAGGTAAT

FMO10832.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
acj6-RF 2594 CG9151-RF 750..1835 8..1079 4915 97.9 Plus
acj6-RI 4343 CG9151-RI 750..1841 8..1079 4845 97.3 Plus
acj6-RH 2573 CG9151-RH 750..1814 8..1079 4590 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15354226..15354459 882..651 1055 98.7 Minus
X 23542271 X 15354754..15354955 511..310 1010 100 Minus
X 23542271 X 15371511..15371688 312..135 890 100 Minus
X 23542271 X 15354534..15354677 653..510 720 100 Minus
X 23542271 X 15378188..15378315 135..8 640 100 Minus
X 23542271 X 15353270..15353387 991..877 440 97.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:35:24 has no hits.

FMO10832.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:30 Download gff for FMO10832.5prime
Subject Subject Range Query Range Percent Splice Strand
acj6-RF 134..1197 1..1057 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:38 Download gff for FMO10832.5prime
Subject Subject Range Query Range Percent Splice Strand
acj6-RF 134..1197 1..1057 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:40 Download gff for FMO10832.5prime
Subject Subject Range Query Range Percent Splice Strand
acj6-RF 744..1807 1..1057 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:40 Download gff for FMO10832.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15371512..15371688 135..311 100 <- Minus
X 15378189..15378318 1..134 97   Minus
X 15353221..15353382 882..1036 93 <- Minus
X 15354227..15354458 652..881 98 <- Minus
X 15354536..15354676 511..651 100 <- Minus
X 15354755..15354953 312..510 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:38 Download gff for FMO10832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15265545..15265721 135..311 100 <- Minus
arm_X 15272222..15272351 1..134 97   Minus
arm_X 15247254..15247415 882..1036 93 <- Minus
arm_X 15248260..15248491 652..881 98 <- Minus
arm_X 15248569..15248709 511..651 100 <- Minus
arm_X 15248788..15248986 312..510 100 <- Minus