FMO10839.5prime Sequence
723 bp (708 high quality bases) assembled on 2011-11-17
> FMO10839.5prime
CAGTCGACATGTTCCGAATCGCTCGTGTTATTTGGCTGCTGCAGTTGCTG
CTGCTGTTGGATCTCAAATTTTCCAACGCCGAGCCGCACAACAAACAACT
GACTGTATTCGCGGAAGCTGGTCGACAGGAGTGCTTTTATCAGCCGATTG
CCACCACCGAGAACATTAAAATCGACTATCAGGTGATACATGGAGGTCTC
GGCGAGACACACATCAATTTTAATCTTATGGATCCAAGTCGTCGACTTCT
GATAGCAGAAACCAAAAGGCAAATGGGGAAACACAGCATTCAGGCTAACG
AAACTGGTTCTTATAAGTTTTGCTTCGATAATACCATCAGCACTTTTAAC
CAAAAGATAGTTTCGTTTACTCTTGAAGTATCTCCGGCCGATCGAGAAGA
GCGGGAATTGCGTGATCTTCGCCAGGAAATGTTAACCGACTACCACTTTG
ACGTGGCCTATACTGGTATCGATAGTTACGTGGGCAAGATCCATGTGAAC
CTCATGAGATCGCGTCAAACTCAGGACTTCATTCGAGCGATCGAGGCCAG
GGATCGCAACGTGGCCGAATCCACCTACTCCATGGTCAACAAATGGTCGT
GGGCCCAATTTTTGTCCATGATATTTGTTGAGCTTTCTACAGGTCTTGAT
GGTCAGGAGTATTTTTAATACGACTGGAACGTATTACAAGTTTTGGAAAA
ATTTTACAACCTTTCTAGACCAT
FMO10839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31787-RA | 876 | CG31787-RA | 87..782 | 9..705 | 3400 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18284939..18285634 | 705..9 | 3375 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-27 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6833 | 59..21 | 134 | 85 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6530..6582 | 62..14 | 119 | 77.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2829 | 72..21 | 118 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1563..1596 | 59..26 | 116 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 8282..8349 | 723..656 | 115 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2335 | 69..31 | 114 | 76.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2687 | 58..1 | 113 | 70.7 | Minus |
FMO10839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:34 Download gff for
FMO10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 42..753 | 1..713 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:56 Download gff for
FMO10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 42..753 | 1..713 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:52 Download gff for
FMO10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 78..789 | 1..713 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:52 Download gff for
FMO10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18284932..18285643 | 1..713 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:56 Download gff for
FMO10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18284932..18285643 | 1..713 | 98 | | Minus |
