Clone FMO10840 Report

Search the DGRC for FMO10840

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:108
Well:40
Vector:pMK33-CFH-BD
Associated Gene/Transcriptyip3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10840.5prime Sequence

605 bp (605 high quality bases) assembled on 2011-11-17

> FMO10840.5prime
CAGTCGACATGATGGAAGGTGAAAGTTCTAAGTCGATCCAAGGCAACATC
GTGGGTCTTAAGAGTACCAACGCCGTGATACTGGCCACCGACTCGAAGGA
ATACGAAATGTATCTAATAGATGACCGCATTTACTGCTGCGCACCTCGTT
CCGGCATCGATCGGAACATAGTTCTGGAAGTGAGTTCAAAGGTGGCAAAT
CTAGTCCGGGATCGCGGCCAGAATGTGACCGTGTCCCAGGTGCGGGACAT
GTTTTGCGAAAAGTACCAGACCGCCGAATCCCCAAATGTCATGATAGCTG
GCCAGGACAGCAGGGGCCTTCACTTATTCAGCATGGAGTGTGGAAAGTCA
CGCATGGTGATGTATGGTGCAAAGGGCAGAGATAAGGAGAACATTGTGGA
CTTTCTCTCGAAAGACTGGAATGATTTCATAAACCTCAGCGAGGCTGAAC
AGTTGGCCAGGAAAGCGCTTAGGTGGGAGCACGTGGAAATGTGCACCATC
TATAGGGCTAAAGAAATCGAGGAACAAGGTGCCAACATGGACTTCGATAT
GGACGACGAGACCTCTGTATCGCCGGCCAGCAATTTCGCAAGCTTTCTAG
ACCAT

FMO10840.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
yip3-RB 788 CG13549-RB 106..684 9..587 2865 99.7 Plus
yip3-RA 1249 CG13549-RA 567..1145 9..587 2865 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23244148..23244601 587..134 2270 100 Minus
2R 25286936 2R 23244652..23244761 133..24 520 98.2 Minus
Blast to na_te.dros performed on 2014-11-27 20:36:09 has no hits.

FMO10840.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:35 Download gff for FMO10840.5prime
Subject Subject Range Query Range Percent Splice Strand
yip3-RA 454..1032 9..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:55:59 Download gff for FMO10840.5prime
Subject Subject Range Query Range Percent Splice Strand
yip3-RA 567..1145 9..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:56 Download gff for FMO10840.5prime
Subject Subject Range Query Range Percent Splice Strand
yip3-RA 567..1145 9..587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:56 Download gff for FMO10840.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23244148..23244601 134..587 100 <- Minus
2R 23244652..23244759 26..133 98 <- Minus
2R 23244817..23244833 9..25 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:55:59 Download gff for FMO10840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19131671..19132124 134..587 100 <- Minus
arm_2R 19132175..19132282 26..133 98 <- Minus
arm_2R 19132340..19132356 9..25 100   Minus