FMO10842.5prime Sequence
587 bp (587 high quality bases) assembled on 2011-11-17
> FMO10842.5prime
CAGTCGACATGGATATTTCCAAGGCCGAGAGTCAAACGCCCGCCGGAGAT
CGTCGATCTGCGAGTCCTGATTATCTGAGAACTCTGCTGCAGGACATCCT
GTGTTTCCTGGTCCTGCTCTCGGTGGCCTTGCTAATTGTGGCTGGCATTT
TGTTTGTGGTGGAGGACGTAAGCCGGCTCCAGCAGCAGCACCAACACCAG
CCGTACCACCACCACCATCATCGCCACATGCGTCCGGATCAGATAGCCAA
TGAACTAAAAGGATCGCCGATCGAGGAGGCACCGAGGGAGCAAGGTCAAG
TCTTCCGACCGCACACATGGATTCGATTCTTTAACTGCAGGAACAAGGTG
CCACAGCAACAGCAGGAAAAAGTTGAAAGGGAGGCGGTTCAGTTTGGCCC
ACCAACGCAAGACGATCAGGCGCAGCAGATCCCATTAGATGCCGTTCAAA
CTTATCGCCCTGCCATAGAACCTATATCGCTGCGCTCTGGCGGAGATTAC
ATAGATGAAACGATCAACAAAAACCCGAATCCGGAACTTCGCCATTTTCT
GCCCAATAATATTATGATCGCAAGCTTTCTAGACCAT
FMO10842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1288-RB | 902 | CG1288-RB | 122..682 | 9..569 | 2805 | 100 | Plus |
| CG1288-RA | 1725 | CG1288-RA | 122..682 | 9..569 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7207760..7208310 | 559..9 | 2740 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-27 20:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 180..242 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6888 | 180..226 | 129 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2503 | 180..226 | 127 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2398 | 174..226 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 180..242 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2434 | 174..259 | 115 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 180..228 | 112 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6795 | 180..241 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6822 | 180..226 | 109 | 70.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3373 | 174..260 | 108 | 59.8 | Plus |
FMO10842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:36 Download gff for
FMO10842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..669 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:06 Download gff for
FMO10842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..669 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:00 Download gff for
FMO10842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 122..685 | 9..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:00 Download gff for
FMO10842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7207764..7208310 | 9..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:06 Download gff for
FMO10842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3033486..3034032 | 9..555 | 100 | | Minus |
