FMO10858.5prime Sequence
990 bp (961 high quality bases) assembled on 2011-11-17
> FMO10858.5prime
CAGTCGACATGGTGAATATATCCACCATAAACTGGGTCTTCGTCTGCGGC
CTGTCCTTTTGCCTGGGCGGGATTGCGGTGCTCAGTCTCATGCCATTGGG
ATCAGACTGCGTGTGCCCGCTGTCCAATCCGCTGGCCAAGCTTGCCGGTG
GCGGAGAAGGAGTATCCGTGATTAAGAAAGAGCCAGCCGATGAGAAGCAG
CCACAGCCACATGACCACGGTGCGTCCGTACACAAGATGGCACTGCTGGT
GCCGTTTCGAGACCGATTTGAGGAACTCCTCCAGTTCGTCCCCCACATGA
CCGCCTTTTTGAAGCGGCAGGGCGTGGCGCACCACATCTTTGTGCTGAAC
CAGGTGGACAGGTTCCGCTTCAATCGCGCCTCTCTCATCAACGTGGGTTT
CCAGTTTGCCAGCGATGTGTACGATTACATTGCCATGCACGACGTAGACT
TGCTGCCCTTGAATGACAATCTGCTCTATGAGTATCCCAGCAGCTTGGGA
CCACTGCACATCGCCGGACCGAAGCTACATCCCAAATACCACTATGATAA
CTTCGTTGGAGGAATATTACTGGTGCGACGCGAGCACTTTAAGCAGATGA
ACGGCATGTCGAACCAGTACTGGGGCTGGGGATTAGAGGACGACGAGTTC
TTCGTGCGCATCCGGGATGCAGGACTGCAGGTGACGCGGCCGCAGAACAT
TAAGACTGGCACTAATGATACATTCAGCCATATTCACAACCGCTATCATC
GTAAGCGGGACACCCAGAAGTGCTTCAACCAGAAGAGATGACCCGCAGCG
GGACCACAAGACGGGCCTGGACAACGTGAAGTACAAAATACTTAAAGTGC
ATGAGATGCTCATTGACCAGGTGCCGGTGACCATCCTCAACATTTTGCTC
GATTGTGATGTTAATAAAACCGCCTTTGGTGCGACTGCTCCGAACGGCAG
CGCTGCATCGGCGGTAACATACGCAAGCTTTCTAGACCAT
FMO10858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalT7-RA | 1099 | CG11780-RA | 115..1074 | 9..966 | 4630 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25023526..25024149 | 104..727 | 3105 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25024213..25024457 | 724..966 | 925 | 96.4 | Plus |
| 3R | 32079331 | 3R | 25023370..25023466 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:59 has no hits.
FMO10858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:38 Download gff for
FMO10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 89..1062 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:22 Download gff for
FMO10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 106..1079 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:16 Download gff for
FMO10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 106..1079 | 1..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:16 Download gff for
FMO10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25023361..25023466 | 1..105 | 96 | -> | Plus |
| 3R | 25023528..25024149 | 106..727 | 99 | -> | Plus |
| 3R | 25024217..25024462 | 728..972 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:22 Download gff for
FMO10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20849083..20849188 | 1..105 | 96 | -> | Plus |
| arm_3R | 20849939..20850184 | 728..972 | 96 | | Plus |
| arm_3R | 20849250..20849871 | 106..727 | 99 | -> | Plus |
