FMO10862.5prime Sequence
1087 bp (970 high quality bases) assembled on 2011-11-17
> FMO10862.5prime
CAGTCGACATGTCCTCGCCAGCCCCCAAATCGCCGGAGCTTTCGGATAAA
AGCAAGAAATACGACAGACAAATCAGGCTGTGGGGAGAGCATGGACAGAC
GCTATTGGAGGCAGCCACAGTATGTTTGGTGAATGTTACGGCCGTCGGCT
GTGAAACTGCCAAGGGACTGGTGCTACCCGGTATCGGAGGCTTCACTGTG
GCCGATGGCAGCACCGTCAAGGAGGAGGATCTGGGCAACAATTTCTTCCT
CGATTCCAGCTATCTGGGCAAATCTAAAGCATTGGCTTGCATGCAACTTC
TCCAGGAACTCAATCCCGACGTAAATGGCGATTATGTCGACGAGAGTGCC
GACTTTTTGTTAGCCAACAGACCGAACTTCTTCGACAGCTTCGATTTAGT
GATTGCCTCCAATCTCAATGAGCAGACTTTGCTTCTCTTGGCCGAACGGT
TATGGGAGCTTAACGTTCCATTAATCTACTGCCGATCGCTTGGCATGCTG
GGCACAATACGCTTGCAAATACGGGAACACTGCATCGTGGAGGCGCATCC
GGATAATCGACAGTTTGATCTGCGTCTGGAGCATCCATTCGATGCTTTGC
GGGAGCATCTCGACGGCACCGAGGTGACCAGTAAGGTGCCCTGGCTGCTG
GTGCTTCACAAATATCTTAATGTGTGGCAAAAACAACAAGCGGATGGGAC
TCAAACGCCTCGAAATTACAAAGAGAAGAATCAGTTGAAGGAGACCATTA
GAGAGGAGATGAAGGCGGATGAGGAAAACTATGAAGAGGCCATCAAGGCG
GTCAATACAGCCTTTGGAGCGGGACAGGTTCCCAAAAGCCTGAAAGCCAT
ATTCGAAGGATGATGCCTGCGAACAGTTAAACAAGAGAGCAACGTCTTTT
GGATCATGGGCCAAGGCCTAAAGCACTTTGTGATAACATGAAATGAGGGC
CATCTCCCCTCTGCCTGGCGTTCTGCCGGAATGACTGCCATAATGGACTC
CTATAATCGCCTTGCATCACATCTATCCGTCCAAAAGGCGCTGCCAGACA
CCCGATGAGTGTATCCAAATTGCCAGAGATAACTTAA
FMO10862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
APP-BP1-RA | 1867 | CG7828-RA | 274..1311 | 9..1049 | 4755 | 97.7 | Plus |
APP-BP1-RB | 1650 | CG7828-RB | 57..1094 | 9..1049 | 4755 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11099031..11099674 | 242..886 | 3100 | 99.1 | Plus |
3L | 28110227 | 3L | 11098808..11098974 | 75..241 | 835 | 100 | Plus |
3L | 28110227 | 3L | 11098685..11098753 | 9..77 | 330 | 98.6 | Plus |
3L | 28110227 | 3L | 11099741..11099879 | 886..1025 | 330 | 87.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:28 has no hits.
FMO10862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:45 Download gff for
FMO10862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
APP-BP1-RA | 266..1316 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:05 Download gff for
FMO10862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
APP-BP1-RB | 49..1099 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:51 Download gff for
FMO10862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
APP-BP1-RB | 49..1099 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:51 Download gff for
FMO10862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11098810..11098974 | 77..241 | 100 | -> | Plus |
3L | 11098677..11098752 | 1..76 | 94 | -> | Plus |
3L | 11099031..11099676 | 242..887 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:05 Download gff for
FMO10862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11091777..11091852 | 1..76 | 94 | -> | Plus |
arm_3L | 11091910..11092074 | 77..241 | 100 | -> | Plus |
arm_3L | 11092131..11092776 | 242..887 | 98 | -> | Plus |