Clone FMO10862 Report

Search the DGRC for FMO10862

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:108
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAPP-BP1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10862.5prime Sequence

1087 bp (970 high quality bases) assembled on 2011-11-17

> FMO10862.5prime
CAGTCGACATGTCCTCGCCAGCCCCCAAATCGCCGGAGCTTTCGGATAAA
AGCAAGAAATACGACAGACAAATCAGGCTGTGGGGAGAGCATGGACAGAC
GCTATTGGAGGCAGCCACAGTATGTTTGGTGAATGTTACGGCCGTCGGCT
GTGAAACTGCCAAGGGACTGGTGCTACCCGGTATCGGAGGCTTCACTGTG
GCCGATGGCAGCACCGTCAAGGAGGAGGATCTGGGCAACAATTTCTTCCT
CGATTCCAGCTATCTGGGCAAATCTAAAGCATTGGCTTGCATGCAACTTC
TCCAGGAACTCAATCCCGACGTAAATGGCGATTATGTCGACGAGAGTGCC
GACTTTTTGTTAGCCAACAGACCGAACTTCTTCGACAGCTTCGATTTAGT
GATTGCCTCCAATCTCAATGAGCAGACTTTGCTTCTCTTGGCCGAACGGT
TATGGGAGCTTAACGTTCCATTAATCTACTGCCGATCGCTTGGCATGCTG
GGCACAATACGCTTGCAAATACGGGAACACTGCATCGTGGAGGCGCATCC
GGATAATCGACAGTTTGATCTGCGTCTGGAGCATCCATTCGATGCTTTGC
GGGAGCATCTCGACGGCACCGAGGTGACCAGTAAGGTGCCCTGGCTGCTG
GTGCTTCACAAATATCTTAATGTGTGGCAAAAACAACAAGCGGATGGGAC
TCAAACGCCTCGAAATTACAAAGAGAAGAATCAGTTGAAGGAGACCATTA
GAGAGGAGATGAAGGCGGATGAGGAAAACTATGAAGAGGCCATCAAGGCG
GTCAATACAGCCTTTGGAGCGGGACAGGTTCCCAAAAGCCTGAAAGCCAT
ATTCGAAGGATGATGCCTGCGAACAGTTAAACAAGAGAGCAACGTCTTTT
GGATCATGGGCCAAGGCCTAAAGCACTTTGTGATAACATGAAATGAGGGC
CATCTCCCCTCTGCCTGGCGTTCTGCCGGAATGACTGCCATAATGGACTC
CTATAATCGCCTTGCATCACATCTATCCGTCCAAAAGGCGCTGCCAGACA
CCCGATGAGTGTATCCAAATTGCCAGAGATAACTTAA

FMO10862.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
APP-BP1-RA 1867 CG7828-RA 274..1311 9..1049 4755 97.7 Plus
APP-BP1-RB 1650 CG7828-RB 57..1094 9..1049 4755 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11099031..11099674 242..886 3100 99.1 Plus
3L 28110227 3L 11098808..11098974 75..241 835 100 Plus
3L 28110227 3L 11098685..11098753 9..77 330 98.6 Plus
3L 28110227 3L 11099741..11099879 886..1025 330 87.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:38:28 has no hits.

FMO10862.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:45 Download gff for FMO10862.5prime
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RA 266..1316 1..1055 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:05 Download gff for FMO10862.5prime
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RB 49..1099 1..1055 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:51 Download gff for FMO10862.5prime
Subject Subject Range Query Range Percent Splice Strand
APP-BP1-RB 49..1099 1..1055 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:51 Download gff for FMO10862.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11098810..11098974 77..241 100 -> Plus
3L 11098677..11098752 1..76 94 -> Plus
3L 11099031..11099676 242..887 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:05 Download gff for FMO10862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11091777..11091852 1..76 94 -> Plus
arm_3L 11091910..11092074 77..241 100 -> Plus
arm_3L 11092131..11092776 242..887 98 -> Plus