FMO10863.5prime Sequence
1071 bp (950 high quality bases) assembled on 2011-11-17
> FMO10863.5prime
CAGTCGACATGTCCCAGGAAATCAATAGAAGCGCACAAGTGGTGCCCGCT
TGGCTCACTCGCGACTATGTGGAGCAGAAGCTGCGTTCCTACTTTAGAAA
TGACTCCCTCCGCCTGGTGAACCTGGACATCAAGCTGGCCCTTGGCAACG
GGGAGAACTACTCAAGCGTGATAACTCGCATCTATGTGGAGTATACGACG
GATAAATCAAAGGATAAACAATCCACCAGATTCCTGGTGAAAGAGAGTTT
CGCCGACGCAGGTCCGGCGGCGCAGGTTCTCCTGAGCTACGTAGTGTACA
ACAGGGAATTGGATCTGTATGAGCGCATCCTGCCCCAGATGGCGGAAGTG
GTGCGAAATGAGCTGGCAGATTCCCGGAAACTATTTGCAGGCACTGTTTA
TGTTGATCGGAAACGGGACTCGATCATCTTTGAGGATATGTCGCTGGAGA
ATTACAGAGTGGCCGATCGGCTCAAGAAACTGGATCTGGAGCACACTCAT
CTGGTACTCGAGAAGCTGGCCAATTTCCATGCAGCCGGAGCAGCCTTGGC
TGAGCGCCAGCCTGGAATCTTTGCGAAGAATTTCGATCGTGGATTCTTTA
ACCAGCATACCCGCGGCTACGAGCCCATCATGAAGAATCTTCTGATGGCT
TTGTCCCGATCCCTGGAGCTGGAGCCGGATCTGTGTCAGCGTTACCAGGC
AAAGATCGATCGATTGGTGGAGAACGTAATGGAGTACGGAGAACGATCGA
CGACCATTGTTCCCGGTGACTTTTTGACCCTGGCTCACGGGGATCTCTGG
ACCACCAATATTATGTTCAATACGACGACAAAGGACATCCCATAAATGCC
ATCTTTATCGACTTTCAGTTCGTGCTTGAAACCTCGCCGGCCATCGATCC
TACACTACTTCTTTTCAACGGCCCTTGCAGGCTGTATTTCGACTGAAGAA
ACAGCCCAGAGCTGGCCCAGTTCCTCCAATTACAAACTGGTGGCTGCCTG
AAAAAACCCGTCGTTCCGGAAATGGTTCCGAACCTATTCGCCTTCCATCC
CCGTTCCGAAACAGATCCTCT
FMO10863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11891-RE | 1337 | CG11891-RE | 6..1052 | 14..1069 | 4440 | 95.6 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1591..2637 | 14..1069 | 4440 | 95.6 | Plus |
| CG11889-RA | 2944 | CG11889-RA | 1613..2659 | 14..1069 | 4440 | 95.6 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 136..902 | 153..919 | 865 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25271879..25272853 | 14..999 | 4120 | 96.4 | Plus |
| 3R | 32079331 | 3R | 25270366..25271085 | 153..871 | 805 | 74.4 | Plus |
| 3R | 32079331 | 3R | 25274004..25274752 | 165..913 | 590 | 72.5 | Plus |
| 3R | 32079331 | 3R | 25269008..25269511 | 369..871 | 490 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:37 has no hits.
FMO10863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:46 Download gff for
FMO10863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RE | 1..980 | 11..999 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:08 Download gff for
FMO10863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RD | 1591..2565 | 14..999 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:55 Download gff for
FMO10863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11889-RA | 1613..2587 | 14..999 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:55 Download gff for
FMO10863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25271879..25272824 | 14..970 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:08 Download gff for
FMO10863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21097601..21098546 | 14..970 | 97 | -> | Plus |
