FMO10868.5prime Sequence
1087 bp (992 high quality bases) assembled on 2011-11-17
> FMO10868.5prime
CAGTCGACATGTCCGCTCCGGTCCGCGGACTGGACGAGAGCAGCAAGGGC
GTCATAGCCGCCAGCAAGCGCAGCCAGCAGAAATTGCGTCGACGCAAGAT
CTTCACGAGAACGCCCTCGTCCTCCGTACCGCTCGATGTCATCGGGGACA
ACTCTACGTCCTCGTCCTCCGTCGCCGGAAACGCATCCAAGAAGGCTTTG
AATCGGGCACGCAGCGTCGTTGCACCCGATGTGATTACCCTGGTGTCCCT
GTTGAGTTCCGAGGGCAGCGACTCCGAGCGGGAGGATAACAGTTCAGTGG
CGGTATCATCGCCGCCAACTGGCGGGTCGGATAAACAAACATCGGGCGCC
TCGCAGCGAAGGGCGCCTTTGTTGAGGAAGACGGGCAAATCGGTCTCGTT
TCAAGACAGCTATCCGCCCACCTTCCAACTGGCCTCCAAGGAGTACTCGC
ACATGATACGCCGCGGTTCGATAGCACCTCTGGCAGCCCGAATCCGAGCC
AATCGACCGCCCACAGCGCCGCCAGTTTCCATTTTCCTAACCGACGTCCA
GGCCAAAATGGACCAGCAGCCGAAGAAGGAGGGTGGAGCTGACCCACCCG
TTGTCACCTTATCGCCGGACGAGGCCAAGAAGGAGAACAATAACAACGCG
GCCAATTGCGAGGACCAACAACCGCAGCCGGATCACAACTATCCGGCGTA
TGTGCGCAGTCTGAAGGAACGCGAGTGCTGGAAGTTGCACCAGAAGATGG
GAGCCAAGGGCGTCAGTGTGAGCTATGAAACGGTGTTGAGGGGTATGCTC
ACGCCCACCGAGTTCCGGCACTTTCAAAAGCAGCGGGAGCAGGAGGAGGC
CCGAGTTCTCGAGGAGGCGGAGCCGCCGAAGCGGCTGCTGCAGCCGCAAT
CCTTGAGAGCGGGCGAAAAGGATGGTCGCAGCCTCCAGTCACGGCCATCG
AACCGCCTCTTCGGAAGCCCTGCTCCAGGAGCAGGCAAGCTTTTTAGAAC
CATCGTTTGGGCGGCGCGGGCCAGGTTAGTGGTCTTAATCATATCCTAAT
CTAATCATATTCCCACTAGCCTAGAGATCTGGCCAGA
FMO10868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13203-RD | 1617 | CG13203-RD | 352..1320 | 9..978 | 4705 | 99.3 | Plus |
| CG13203-RC | 2286 | CG13203-RC | 1021..1989 | 9..978 | 4705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11376228..11376812 | 393..978 | 2660 | 98.8 | Plus |
| 2R | 25286936 | 2R | 11375534..11375918 | 9..393 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:14 has no hits.
FMO10868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:49 Download gff for
FMO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RD | 346..1324 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:27 Download gff for
FMO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RC | 1015..1993 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:09 Download gff for
FMO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RC | 1015..1993 | 1..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:09 Download gff for
FMO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11375528..11375918 | 1..393 | 98 | -> | Plus |
| 2R | 11376229..11376789 | 394..953 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:27 Download gff for
FMO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7263033..7263423 | 1..393 | 98 | -> | Plus |
| arm_2R | 7263734..7264294 | 394..953 | 99 | == | Plus |
