FMO10872.5prime Sequence
509 bp (509 high quality bases) assembled on 2011-11-17
> FMO10872.5prime
CAGTCGACATGTATTCTCCCAAACTTCTAGAACTACGTAGCGCATTTCGG
CGAGCTTTTGTAGTCGGAATGTCATCCAAACCTCAGTACACCCTAAGCGA
AGTGGATGGGGATCTGTTTTCCGCCCCCAAGACCTATTCCTTGGCGCACT
GTGTGGGCGCAGATCTTGCGATGGGTGCTGGAATTGCCGTGCAGTTCAAG
AAGGTATTCGGAAGGTTGGACGAGCTGCAAGCCCAACAAGCGGGCAGTGG
AGATATTGCGGTGCTGAAGGATGACCAGCGGTACATTTACTACCTAGTAA
CCAAGCCTCAGAGCTGGGGAAAGCCCACCTACGAATCTGTACAAGCATCT
TTGGAGCAGATGCGTGAGCATATGCGCAAAAACAACGTGAATAAGCTGGC
CATCCCAAAAATTGGCTGCGGAATTGATGGCTTGGAATGGGAAAAAGTCA
GCGGAGTCCTCGAGGAAAATAATGGATCGTTTAGTTTAATAGCAAGCTTT
CTAGACCAT
FMO10872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33054-RB | 580 | CG33054-RB | 46..528 | 9..491 | 2415 | 100 | Plus |
| CG33054-RA | 706 | CG33054-RA | 128..569 | 23..464 | 2180 | 99.5 | Plus |
| CG34261-RB | 796 | CG34261-RB | 606..696 | 464..374 | 455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21197760..21198125 | 374..9 | 1830 | 100 | Minus |
| 3L | 28110227 | 3L | 21197548..21197638 | 464..374 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:20 has no hits.
FMO10872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:45 Download gff for
FMO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 48..535 | 9..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:01 Download gff for
FMO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 46..533 | 9..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:48 Download gff for
FMO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 46..533 | 9..497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:48 Download gff for
FMO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21197549..21197637 | 375..463 | 100 | <- | Minus |
| 3L | 21197458..21197490 | 464..497 | 91 | <- | Minus |
| 3L | 21197760..21198125 | 9..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:01 Download gff for
FMO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21190558..21190590 | 464..497 | 91 | <- | Minus |
| arm_3L | 21190649..21190737 | 375..463 | 100 | <- | Minus |
| arm_3L | 21190860..21191225 | 9..374 | 100 | | Minus |
