FMO10879.5prime Sequence
1094 bp (986 high quality bases) assembled on 2011-11-17
> FMO10879.5prime
CAGTCGACATGGCAAAACAAGAAGCAACAAATGGGAAAGTTCGTAATGCA
TCTCTTCATCTGGAGAAGCTGTTGATCGGGGGAAAATATCGGCTGGTAAA
GCCCATTGGGTCCGGGTCCTTCGGCGATATATATCTCGGACTAAGCATCA
CGGATGGATCCGAGGTGGCCATTAAGGTGGAGAAGAACGATGCCAAGTAC
CCGCAGCTGATATACGAGGCGAAAGTGTACGAACAGCTGGCCCGCTGTCC
GGGCTTCCCGACTCTACTTCATTATGGATGCGAGAAGAACTATAATGCCA
TGGTTATGGACCTATTAGGTCCTTCCCTAGAAGAACTTTTTAACCTCTGC
AAACGCCGATTCTCGCTGAAGACCGTACTCATGTTGACAGACCAGCTGCT
AATGCGAATTGAGTGTGTCCACGAACGTGGGTTCATTCATCGTGACATTA
AACCAGATAACTTCCTAATGGGTCTGGATCGCCACTGCAACAAGCTGTAC
CTCATCGATTTTGGCCTGTCCAAGAGATACAAGGACATAGAGTCAGAGAT
TCATATACCATACCGCACGGATCGGAATCTAACTGGTACTGTTCGCTATG
CCTCTATAAATGCACAGATAGGCGTTGAGCAATCCCGTCGGGATGACATG
GAGTCCATGTCCTATTGTTTGATGTACTTCAATCTGGGAAAGTTACCCTG
GCAGGGTATTACGGCCGCCAACAAGAAGCAAAAGTACGAGAAGATATTGG
AGAAAAAGACAAGCGTCACGATCGCTCAGCTCTGCAAAGGATTTCCCTCC
GAATTTTGCCTGCTTATGACCTATGTCACGAATCTTGGTTTCAAGGAGCC
GCCGGATCACACTTATCTTCGCCAGATATTCCGCATACTTTTCCGCTCAC
TGATCATCATTACGACTATTATATATGACTGGGACTGCCTTGCAGCAGCA
AAGGATCAAATCTTGCCCGCAGCAAGGACAGATTCTGGAATCGGAACGAG
AAGAAGTTCGCAACGGGATGGGACGGGGTTGTGTAGCCTCACGGTACAGA
CGGCCAAGGATTGGGACTGGATCACTGCCCAACTTCTACAACGG
FMO10879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7094-RA | 1412 | CG7094-RA | 155..1236 | 9..1082 | 4900 | 97.7 | Plus |
| dco-RD | 4156 | CG2048-RD | 902..1085 | 575..758 | 290 | 77.8 | Plus |
| dco-RC | 3667 | CG2048-RC | 1514..1697 | 575..758 | 290 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17554608..17555611 | 1013..9 | 4650 | 98.8 | Minus |
| 3R | 32079331 | 3R | 31057156..31057339 | 758..575 | 290 | 77.2 | Minus |
| X | 23542271 | X | 12655701..12655794 | 432..525 | 230 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:40:41 has no hits.
FMO10879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:56 Download gff for
FMO10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 148..1196 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:12 Download gff for
FMO10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 148..1196 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:44 Download gff for
FMO10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 148..1196 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:44 Download gff for
FMO10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17554570..17555618 | 1..1048 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:12 Download gff for
FMO10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17554570..17555618 | 1..1048 | 98 | | Minus |
