FMO10881.5prime Sequence
1157 bp (1008 high quality bases) assembled on 2011-11-17
> FMO10881.5prime
CAGTCGACATGAGTTTGACGGAGATGATGCGGGGCAAATCGATGCCAGCG
GAAAAGAAGAATGACATCAAACTGGCCCAGCATGAATTTGCAACCGTGAG
AATAGTGCAAATCGGATGTGTTTTAAATGTCCTGGCCGAGGCCATCGAAC
GGGTTAAGATCTCGCTAATCATGCCGAAACTGCTGGAACACCCCGCGCAC
ATGGCTAAGATTCTTAATGGAACCAAGTACGAAAAGGCAGTTCACCTGGT
GGAATCGTTTGTTCGTCGAAGGGAGTTCATTCTGCGGGAGAAACGTCCGC
CCCTGATGGATCACGGCATTATCCAGATCATCGATTTCTTCCAGCGGAAC
AGCAGGATCTACCTTCTGTTTCCCAGCTACTACAACCACATGAGCGACAA
CGAGAAGAAGCTGCTGAACGCCTTCGAGATGCTCTATGATCTGGCCAAGG
ACCGCTTGTACAGGACGTCCACCGACGCCATCGCCCAGGAGCGCCAGCTG
CATGCCATGTACAAGCAGAACGAGGTGGTCAAGGAGCAGGTGGAAGAGCT
GCGCAAGAAGATCCTGGATCAGAAGGCGGCCATCAGGAAGAGCTTGGCTG
ATAAGGAGGCCTACCTGCAAAACTACGAGGACCTCCTCATGAAGAAGAAG
AGGGAGAAGAACGAGCGAATCCAAAAGGAAATCGATCGGTGCACTCGTCT
GGTAAAGGCCAATAAAAAATTAAGTTTAGAGCGACAGCTGATTTGGAAGA
CAGCTGCAAAAAACGCGAAACAACTATAACTTACCACAAAAACTATTTAA
AACAGGAAAAGGTGTTTCGAGAGGAAAAAACAAGCTGATTTTACAACTAC
AAGCCATTATCAGAAATACGATCACAGCATTGGCGAAAAGATGATCGAGA
AACATGGAGCTCGCCGAAGACACAAAAGGCTAAGAAGGCCCTCGACGAAT
CACATGATTGGGTTCCTGAAGGTTGAGCGGGTCTTACAAGCAGAATCGTC
GTAAAGCGAGAAGGAAGAAGAAGGCCAGGCACCGCCAGCAATCGTGTCTG
TTATTAGCTGAACCGCGCCAGCCATCAAGATCCGAAATACTGAAAATGTG
AAAGAAACCACATTGCCCAGAAAGAACGGCAAATAAGACCGAGCTTTCTT
AGAACAA
FMO10881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1137-RA | 1363 | CG1137-RA | 127..1261 | 9..1138 | 4990 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6559307..6559905 | 682..84 | 2995 | 100 | Minus |
| 3R | 32079331 | 3R | 6558821..6559030 | 1040..828 | 615 | 95.4 | Minus |
| 3R | 32079331 | 3R | 6559098..6559247 | 828..683 | 550 | 97.3 | Minus |
| 3R | 32079331 | 3R | 6560150..6560225 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:55 has no hits.
FMO10881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:58 Download gff for
FMO10881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1231 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:19 Download gff for
FMO10881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1231 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:50 Download gff for
FMO10881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1231 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:50 Download gff for
FMO10881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6558750..6559030 | 829..1108 | 92 | <- | Minus |
| 3R | 6559098..6559247 | 683..828 | 97 | <- | Minus |
| 3R | 6559307..6559904 | 85..682 | 100 | <- | Minus |
| 3R | 6560150..6560232 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:19 Download gff for
FMO10881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2384472..2384752 | 829..1108 | 92 | <- | Minus |
| arm_3R | 2384820..2384969 | 683..828 | 97 | <- | Minus |
| arm_3R | 2385029..2385626 | 85..682 | 100 | <- | Minus |
| arm_3R | 2385872..2385954 | 1..84 | 96 | | Minus |
