FMO10884.5prime Sequence
1111 bp (979 high quality bases) assembled on 2011-11-17
> FMO10884.5prime
CAGTCGACATGGACTCGCAGGAGGGTACTCAGTGCCAGATCCTGGCCATC
GTCATTCGGGTGTGTGTGTTTAGCGCGTTAACGTACTACACTGCCAAATG
GATGATCAATGCGCTGGATCCCAATAATAAGATCCGGGGTAAGGCGAAAT
ATGTTGCGGAAGAGCAGCTGCGCAAGCTGAACTCCTCGGCGATTGGCGCG
GCAAAGAAGTTTCGAGCCCGTGACTTTAATGAGCACGAGATGATGATTGC
TTCGCATCTGGTGACGCCTGAGGACATTGATATCAGTTGGTCGGATATTG
CCGGACTGGATGGGACTATTCAGGAGCTTAGGGAGACGGTGGTTCTCCCA
GTGCGTCATCGTAAGCTCTTTAGCCGATCGAAACTGTGGCGAGCGCCCAA
GGGAGTCCTGCTGCATGGACCGCCTGGTTGTGGCAAGACCCTGATCGCCA
AGGCCATTGCCAAGGATGCTGGGATGCGATTCATCAATCTGGACGTGGGT
GTGCTAACGGACAAGTGGTACGGCGAAAGCCAGAAGCTGGCCACAGCCGT
TTTCACGCTGGCCAAAAAACTTCAGCCCTGCATCATCTTCATAGACGAAA
TTGAATCTTTTCTCAGGATGCGCGGTAGCAATGATCACGAGGCAACCGCC
ATGATTAAGACTCAGTTTATGTTGCAGTGGGATGGGTTAATGAGCAATAC
CAACATTTGTGTCCTCGTTTTGGGGGCCACAAACCGGCCGCAAGACCTCG
ATAAAGCCATCCTGCGCCGTATGCCCGCACAATTTCACATTGGAGTGCCG
CGAGACTGCCAGCGACGCGAAATCCTTCAGTTGATCCTCCAGACAGAGCA
ACTGAGTCCTTCGGTTAATCTGAAGGAGCTGGCCCGACTGACGATTGATT
TCAGGATCCGATTTGCGGGAATTGTGTCGCCACGCATCCATGTACCGTAT
GCCCCAGTTTACGCGCGAAAGCTGAACACCGGCGAGGAATTGGAAAGAAC
AGATTGGATGGGACTTCCAGTAAAGATCAGGCCTTGCACGGATTGGGAGC
ACTGAATCAATTGAAGACCTTCTCAAGTTCCGTCCGACTGAAGGCTCGAA
ACTCAGGGCCA
FMO10884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4701-RA | 1318 | CG4701-RA | 100..1213 | 9..1107 | 5005 | 97.5 | Plus |
| nmd-RC | 1719 | CG5395-RC | 392..902 | 283..793 | 335 | 71.5 | Plus |
| nmd-RB | 1172 | CG5395-RB | 264..774 | 283..793 | 335 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14766007..14767057 | 9..1053 | 4785 | 98.1 | Plus |
| 2L | 23513712 | 2L | 10302990..10303500 | 793..283 | 335 | 71 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:47 has no hits.
FMO10884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:52 Download gff for
FMO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1199 | 9..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:43 Download gff for
FMO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1199 | 9..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:21 Download gff for
FMO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1199 | 9..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:21 Download gff for
FMO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14766007..14767106 | 9..1095 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:43 Download gff for
FMO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14766007..14767106 | 9..1095 | 97 | | Plus |
