FMO10896.5prime Sequence
1091 bp (966 high quality bases) assembled on 2011-11-17
> FMO10896.5prime
CAGTCGACATGCTGTTCTGGAGATTGGTGCTCCTGGGAATGCTCTATCTG
TCCCTGAGTTTTGGCCAGTTGCGAGAGAACAATGCCCAACAGCGCTTTGC
AAGATCTGTGGTGAATATGGATGATATGCTGAACTTAGAGGACGATCTTG
TCTCAAATGTGGAAAAGCTGGCGGAAGCGCTTGCACGAAAAGCCAAAACC
ATTAAATGGGGCGTCTTCAAGATGATGAAAAGGCGACAGGAGTATAAGTC
GTCTATGGAAATTTTTGCCAATCCGATTGACACCTTTTCCCTCATTCGTC
ACATGCAGTCGAACTGGTTGATGTGGCTATTGTACTTGGAAACGCCTGTT
GGCCAAGAGGAATTGTTTTTTGTGGACTCAAGGATGCCCCTATTGCCAAA
GTACTTTGACTTTATAGATGCCGCTGAAGGCATTAGAAAAATGCAGGCCA
CATACCAGATGTTTTCCTCAGATATAGCCAAAGGCTTACTAGATGGAGTG
CAATACAACTCTTCTCTAAAACCCATCGATTGTCTCGCAATTGGTCTTCA
TCTGATGAATAACTCGCGTTGGTATGCTGCCGAGCAATGGATAAGTGCTA
GCATTGAAGCCTATGATCAGAAAAGTTCTCAGACCGATATGGAGTTATTG
AGGGGACCAAAACTGGCTGACCTGTGCAGAATACTGGGTCAAGTACAAAT
GAAGCAGAGAAATCATGAGGGTGCTCTTCAAGCCTATCAGGTTGCGCTAA
AGCTTTCGCCTCATGACCCAGAAATATATGAGGAGTATCGGATCCTGTAA
AAAAGAGATCTTACGTTGTCAGATATCGAACCGATTGAACAGGATAAGGA
CAACTCCCACGAAAGATTGGTTCTTCCGCCCTGTTGCAGTGGTCGCTGTC
AAGTTCCCCGAAATCTGAGTAATCTATATTGTGTATATACCATGTTACCT
CCCCATTTCTGCAACTGGACCCCATCAAACGGAAATTCTATCGATTGATC
CCTCCCTATGCTCCTCATGACTTGATCTCCCAAAGGAGAGTATCTCATAG
AACCTTCGAGCAAGGACACATGTTGCGTTTGCCCAACCTGA
FMO10896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE2-RA | 1782 | CG9720-RA | 5..1079 | 9..1076 | 5065 | 98.6 | Plus |
| CG31524-RB | 1688 | CG31524-RB | 80..159 | 85..164 | 220 | 86.4 | Plus |
| CG31524-RB | 1688 | CG31524-RB | 421..991 | 435..1003 | 220 | 70.4 | Plus |
| CG31524-RA | 1691 | CG31524-RA | 80..159 | 85..164 | 220 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30510901..30511275 | 1076..709 | 1375 | 95.5 | Minus |
| 3R | 32079331 | 3R | 30511337..30511537 | 709..509 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 30512010..30512210 | 209..9 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 30511597..30511749 | 508..356 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 30511801..30511950 | 357..208 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 30514197..30514276 | 164..85 | 220 | 85 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:23 has no hits.
FMO10896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:58:10 Download gff for
FMO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 1..1094 | 5..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:33 Download gff for
FMO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 1..1094 | 5..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:48 Download gff for
FMO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE2-RA | 1..1094 | 5..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:48 Download gff for
FMO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30512011..30512214 | 1..208 | 98 | | Minus |
| 3R | 30510886..30511275 | 709..1090 | 95 | <- | Minus |
| 3R | 30511338..30511537 | 509..708 | 100 | <- | Minus |
| 3R | 30511597..30511747 | 358..508 | 100 | <- | Minus |
| 3R | 30511801..30511949 | 209..357 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:33 Download gff for
FMO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26336608..26336997 | 709..1090 | 95 | <- | Minus |
| arm_3R | 26337060..26337259 | 509..708 | 100 | <- | Minus |
| arm_3R | 26337319..26337469 | 358..508 | 100 | <- | Minus |
| arm_3R | 26337523..26337671 | 209..357 | 100 | <- | Minus |
| arm_3R | 26337733..26337936 | 1..208 | 98 | | Minus |
