FMO10902.5prime Sequence
1129 bp (1025 high quality bases) assembled on 2011-11-18
> FMO10902.5prime
CAGTCGACATGCTCCTCAGCTCGCCGCTGAGTAAAAACCCAGTGGTGCAG
CGCAGCCTGGACTTGCGATTGCAGGGCGCCCAAGCGCGGCATTACCTCAA
GTGGTGCTCCATAAATGTGGTGCTGCTGTCGCTACTCCTCTTCGACCTCT
GGCAGGCATGTCGGTCCGCCTACAGGACCTACTGGTTCCTGGCGGAGTGC
ACCATTACGACCCTGATTGGCCTAAGTGCACTCGCCTGCTTCGGCAAGTA
TTTGTGGTTATGGTTTGGTGGTGACCAAGTTACGGGTAGCGATATCCAAA
AGTGGCTGCTTGATGGCAAGGCAGAGAACTCTTTTCGTACAGTTTGCTCC
CGAGCCGTGATGAAACCACGCAGCTACGAACCGGATAGCGATATAGAGGA
CGACATACCCATCATCAACTGGCACTCCTCCTTCGAGGACTCCTGCTGGG
GCTCGCAATCCATGCGCCGCAGCCCCAGTCCCACAAGGACGCCGCAGCAG
ACGAAACAAAACACCTCTTACAACTCCTCGATGGTTCGAAACAACTCGCT
GAATGCCAGCAATCTGAGCAACGAGTCTACCTATATGTCCCCGTATGCGG
AGGTGCGACGCGATGACTTCATGACCGATACACGAAAGTTGACCAGTCTA
ATGAAGCAGGCGGATCGGGAGCGCAGCATGATGGACAGCTCGGATACACC
CAATGTGCAGAGCATGGGATCGGCCAACTCCTTCTGGAATTACTGCAACA
ATGCGGCCTATATGCTCAAGACCACCATCTATCAACTATCGCCACCTCCG
GCTGTTTCTACGGAAATGCTCCCACCTCGATTGAGGAGTTTGGCGGTATT
CAGTTTAGGGACAGCAATTCGGAGGTCATCAAGCGCATATCCACGGACAA
ACTGTCGCATATGTGGCCAACCTAAGATTTTGGGATTCTACGACCAATAC
TTCAGCGTTTGGTCAAAGAGATCAATTATGGTGGACGATGTTTTCCGCAG
CGAGCTCTTGAATTGACATTAAAATTGATCTGTGGAGTGTAAAGAGATTT
ACGCAACAGCGAGAACAGCCAGTCTGCAGACGTGTGCGTCCATGTTTGGC
ATGCTCTTACCTTCCTGAACTTCCCAACC
FMO10902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RB | 1791 | CG6479-RB | 26..1133 | 9..1113 | 5040 | 97.8 | Plus |
| CG6479-RA | 1861 | CG6479-RA | 106..1203 | 19..1113 | 4990 | 97.7 | Plus |
| CG6479-RC | 1843 | CG6479-RC | 106..1185 | 19..1113 | 4710 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17338129..17338738 | 930..323 | 2935 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17338796..17339111 | 324..9 | 1580 | 100 | Minus |
| 3L | 28110227 | 3L | 17337979..17338067 | 1027..936 | 235 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:12 has no hits.
FMO10902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:29 Download gff for
FMO10902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..1144 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:30 Download gff for
FMO10902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..1144 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:20 Download gff for
FMO10902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..1144 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:20 Download gff for
FMO10902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17338129..17338736 | 325..930 | 99 | <- | Minus |
| 3L | 17338796..17339116 | 1..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:30 Download gff for
FMO10902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17331229..17331836 | 325..930 | 99 | <- | Minus |
| arm_3L | 17331896..17332216 | 1..324 | 99 | | Minus |
