FMO10906.5prime Sequence
707 bp (707 high quality bases) assembled on 2011-11-18
> FMO10906.5prime
CAGTCGACATGGACAAGGATGCGTTTACATTACAGGCCATACGGCAGGAC
CTTATCGATAACAATCTGCAGGCTAAGGCAATAATACACGACATCCTGAA
CAGCCGCACCTCCATCGCCGAACTCGAGGAGCTGAACGAAGCGGGCCGCT
CCAAACTGTCTGCTATCCGCAAAAGCATCGAGCGGCTGGACGACTGGGCG
CGGGACACGGCAGACTCTGCGCTGGCCAATGAAGTGGACGACCACCGTGA
TCAGTTCTCCAAAACGCTGCAGGCGTTCCGAAAAGCAAACGTGTCCACGA
TGCTGGAGATCGAGAAGGCCAATCGGGAGGAGTTAATGGCCATTACCGGC
GAGAGTGAGCTACGCCAACGAACCACAACACGGGCGCGGCACAACCAGGG
CAGTCTGGTTTCGCAGGAGAACGACGTGACCGAGAAGATGCTGGCTATAT
CGCGGCACCTCTCGGAGACCACCCAGAAGAGCGCCATCACCCTGGAAACG
CTCGTGGCCTCGTCGCAAAATGTGGAGGCCACCAGCGACGAACTGCACCA
CACGGCCGGCAGCATTAGCATGTCCGGCAAGCTGCTCAAAAAGTACGGAC
GACGCGAGTGCACTGACAAAATGCTGCTCTTCTTCGCCTTCTCCTTGTTC
CTCGCCTGTGTCTTTTACATCGTCCAAAAGCGACTCTTCGCAAGCTTTCT
AGACCAT
FMO10906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2023-RA | 2426 | CG2023-RA | 61..744 | 6..689 | 3420 | 100 | Plus |
| CG2023-RB | 953 | CG2023-RB | 89..772 | 6..689 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5823708..5824307 | 689..90 | 3000 | 100 | Minus |
| 3R | 32079331 | 3R | 5824360..5824444 | 90..6 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:35 has no hits.
FMO10906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:31 Download gff for
FMO10906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RA | 56..748 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:43 Download gff for
FMO10906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RA | 56..748 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:31 Download gff for
FMO10906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RB | 84..776 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:31 Download gff for
FMO10906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5823704..5824307 | 90..694 | 99 | <- | Minus |
| 3R | 5824361..5824445 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:43 Download gff for
FMO10906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1649426..1650029 | 90..694 | 99 | <- | Minus |
| arm_3R | 1650083..1650167 | 1..89 | 95 | | Minus |
