Clone FMO10907 Report

Search the DGRC for FMO10907

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3308-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10907.5prime Sequence

698 bp (534 high quality bases) assembled on 2011-11-18

> FMO10907.5prime
AGCTGGAATTGGACATGAAGCACTGCTTTGAGAACCTGATCGTCATCGAC
GTGGGTGCGAATCTGACCAACAAGAAGTATAGCCGTGATCTGGATTCCGT
GGTGCAGAGAGCCAGAGACGCAGGTGTCCAGAAACTAATGGTTCACGGCA
CTTCGGTCAAATCGAGCAAGGAAGCGCTGCGCCTTTCGCGCATCTATCCC
GACATAATCTACTCAACTGCTGGCATTCACCCGCACGACTCCAAGTCCAT
CGTGGAAGAGCCGGCCACGTGGTTCGATCTGGAGCACATCGCCCAGGCGC
AGGAGTGTGTGGCGATTGGCCCCTGCGGCTTGGACTACCAGCGGGACTTC
TCCGAACCGGACGCCCAGAAGCTGATCTTCGCCAAGCAGCTGCATCTGGC
CATCCGGCTAAATAAACCTCTGCTGATCCACGAGCGGTCGGCTCAGCTCG
ATTTACTCGAAATACTAGACAAATTCAAGAATCTTCCGCCTGTGATCATC
AGAGGTTTTATGGGCACCGCCGAGGAGGCGCTTAAGTACCTAGACCGGAG
GTTTCTACATCAGCCTGACGGGCTACCTGTGCAAGGACAATCGGATACTG
GCGTTCGCCGCCTGCTGGAGGACGGCACATTGCCCGCTAGACAGACTACT
GGTGGAGACGGATGCTCCCTTTCATGTACCCAAACACAAGGGCTTCCA

FMO10907.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3308-RA 2124 CG3308-RA 355..1050 1..698 3365 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21272487..21272839 472..120 1750 99.7 Minus
3R 32079331 3R 21272213..21272436 698..473 920 97.8 Minus
3R 32079331 3R 21273339..21273463 125..1 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:47:43 has no hits.

FMO10907.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:32 Download gff for FMO10907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3308-RA 353..1047 1..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:48 Download gff for FMO10907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3308-RA 355..1049 1..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:34 Download gff for FMO10907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3308-RA 355..1049 1..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:34 Download gff for FMO10907.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21272214..21272436 473..697 97 <- Minus
3R 21272487..21272835 124..472 99 <- Minus
3R 21273341..21273463 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:48 Download gff for FMO10907.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17097936..17098158 473..697 97 <- Minus
arm_3R 17098209..17098557 124..472 99 <- Minus
arm_3R 17099063..17099185 1..123 100   Minus