Clone FMO10909 Report

Search the DGRC for FMO10909

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34296-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10909.5prime Sequence

299 bp (299 high quality bases) assembled on 2011-11-18

> FMO10909.5prime
CAGTCGACATGAAGCTGGCCCTGCTCCTGATCCTCTGCTGTTGCCTCATC
GGAATGGCGATTGGTGACTCGGTTTTGGTGACCAAGCCGCCGTTCATTCG
CAGTCGCTATAGCTTGCGTTGGAGGAAGACAACCACTGTGGCGCCTGAAG
TGGTCACTGGATCCAGTGGATCAACCGTTAACACGGTCACCACCACCGAC
CATCCCAAGCTGGCCACTTCCACCGCCAGTTCGGATTACGACTATTACGG
AAATGGGGAGACGGAGAATGTGGTGCACAAGGCAAGCTTTCTAGACCAT

FMO10909.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34296-RA 420 CG34296-RA 22..294 9..281 1365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29722663..29722887 57..281 1125 100 Plus
3R 32079331 3R 29722559..29722607 9..57 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:14 has no hits.

FMO10909.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:05 Download gff for FMO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34296-RA 10..293 1..285 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:01 Download gff for FMO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34296-RA 14..297 1..285 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:25 Download gff for FMO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34296-RA 14..297 1..285 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:25 Download gff for FMO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29722551..29722607 1..57 93 -> Plus
3R 29722664..29722890 58..285 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:01 Download gff for FMO10909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25548273..25548329 1..57 93 -> Plus
arm_3R 25548386..25548612 58..285 99   Plus