FMO10911.5prime Sequence
1098 bp (893 high quality bases) assembled on 2011-11-18
> FMO10911.5prime
CAGTCGACATGACGACAGCTGACCGCCCGCTCGACGTCAGCAGGAGCAGC
GGAAGCGGTAGCCGGAGCGGTAACAAAACGGCCAGAACCAGGAATCCAGT
GGAACCGCAGCCGCAACCGCCGTTCGTGGATCGACGACGACGCCTGAACA
GGAACTGGTCACTGATCTTACTCGCCTTGGCCATGTCCCAGTTTGCCCTC
TCCGGCGGCGGTTGTGGCGTCTCAGCGGCGCCCAGTCACCTGGCCACCCC
GCCCACTGACAGCCCCTCCAGTCCCATCAATCCCACCAATCCCCTGAAGC
ACCTACAGAAGCGTTCCAGAGCGGCCAACTTCCGGCTGACCTTCCAGCAG
AAATTGAATGCCAGCAGTACGCATCTGGACTGGGAGAACACCTGCAATCT
GAAGCCCACGGGTCTGAACGAAACGCATAGCAAGGCGAAACGCTGTTTGA
AACGCCAAAGGATCCTGCAGAATCTACAGAACCAAACGGGCCGCGAGCTG
CGGGGCATCCAGGCCGAGGACAAGGCCAGGATCACCACCAATGCGGACAA
GCTGGCCACAGTGAGCACCAAGACTCTGGACATTGTCGAGAAGAACAAGT
GGCGATTCTATAAGGGAAACTACAGATTCCTGCCCCGTCTGAATCTCACT
AGCAAACAGTTGAACCTTCGCCACGCCCATCGCGACCTGCAGATTTACGT
GGGCGCCTTCACGTACATGCGCAACATCAAGTTGCATTGGGACCTGGCCA
ACTTGCAGGCGAAGAGCGTGCTCTCCGACGAGCTGGGAAGGATGCGGAAG
TCCGCCCGCGAGGTGCTCTGCAGCGTGAGGAGCCATCAACCTGACCACCC
TGCTGTACACACCCAACAGCAGCGGGCGCCACAGTCGAGGGGTCAGAAGA
GCGGCGCCAGGCCCAACCGGTGGTCACCTACAGATACTGCCGCGCAGCTG
ATGGAGAGCGTCTGCAGCAGTTCACCTCGACGTGTTGCCACTCTTGGAAG
CTGCACCAGCAGCGACCCTGGCCGCACGCGGGGAGATGTACATCACGGCC
GACGACTTGATGGTCTGGGAGCACCACGTCCTCTTCCCAACTGAAGTT
FMO10911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd3-RB | 2221 | CG33542-RB | 371..1473 | 9..1098 | 4845 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18279433..18279883 | 11..461 | 2195 | 99.1 | Plus |
| X | 23542271 | X | 18283394..18283834 | 657..1086 | 1325 | 93 | Plus |
| X | 23542271 | X | 18279985..18280187 | 461..663 | 1000 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-27 20:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 533..596 | 509..573 | 124 | 71.6 | Plus |
FMO10911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:32 Download gff for
FMO10911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd3-RB | 367..1429 | 3..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:51 Download gff for
FMO10911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd3-RB | 367..1429 | 3..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:37 Download gff for
FMO10911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd3-RB | 367..1429 | 3..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:37 Download gff for
FMO10911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18279425..18279883 | 1..461 | 98 | -> | Plus |
| X | 18279986..18280183 | 462..659 | 100 | -> | Plus |
| X | 18283397..18283804 | 660..1056 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:51 Download gff for
FMO10911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18173458..18173916 | 1..461 | 98 | -> | Plus |
| arm_X | 18174019..18174216 | 462..659 | 100 | -> | Plus |
| arm_X | 18177430..18177837 | 660..1056 | 94 | | Plus |
