FMO10913.5prime Sequence
924 bp (924 high quality bases) assembled on 2011-11-18
> FMO10913.5prime
CAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAGTCCTGCTG
CTGCTGTTCGCCTTCTTTGCCACGACGTCCGCGGACAGTGCACCCTTCAT
GCCCATACCCACCCAGCACGACGATCCGACCCAGAAACAGAAACAGAATC
AGAATCAATCTCCGATACCCGAAACGAACCGCCATTACCATCAGTATCAC
AGCCTGATCCAACCAGATCAGTACTTCAAAGTGCAGCGCTCCCCGAATGG
AAAGCTGAATCTGGTCTTTAACGATACGTTCGTATCTTTGCAGAGGACGG
ACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATCCATCGGAT
ACCTTTGTCTTCCCCGATTCCCCCATAGCCAAGTATCGGCCACCACAATC
CCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACAATCCCTGCGCCA
AGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGGACGACTAT
CCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAACTTCGCCAAGTT
CTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTCGCGTTGGTGGCT
CAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTGGTGTACCCAAAA
AAGGGCTTGAGGGCGGACGACACCTGGCAGTTAATTGTCAATAACGATGA
GTACAAACAGGCCATCCAGATCGAAGAGTGCGAAGGAGCGGATCAACCCT
GTGACTTTGCCGCCAACTTTCCGCAGAGCTATAATCCAATCTGCAAGCAG
CACTACACACAGCAGACCCTGCCCAGCATCAAGAGTGATGGCGAACTGGA
CGTGGTGCAGAATTCCTTCAAGATCCCCTCCTGCTGCAGTGCGCGTTGAA
GACTGGGGCAAGCTTCTAGACCAT
FMO10913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz-RB | 2050 | CG6134-RB | 861..1761 | 8..907 | 4375 | 99.1 | Plus |
spz-RA | 2128 | CG6134-RA | 1006..1839 | 75..907 | 4040 | 99 | Plus |
spz-RD | 1969 | CG6134-RD | 1063..1680 | 291..907 | 2960 | 98.7 | Plus |
spz-RA | 2128 | CG6134-RA | 861..927 | 8..74 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27066099..27066480 | 733..352 | 1865 | 99.2 | Minus |
3R | 32079331 | 3R | 27066608..27066885 | 351..74 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27065857..27066031 | 907..734 | 765 | 97.1 | Minus |
3R | 32079331 | 3R | 27069144..27069210 | 74..8 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:42:48 has no hits.
FMO10913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:07 Download gff for
FMO10913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 849..1766 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:16 Download gff for
FMO10913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 851..1768 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:42 Download gff for
FMO10913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 851..1768 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:42 Download gff for
FMO10913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27069144..27069216 | 1..74 | 96 | | Minus |
3R | 27065850..27066031 | 734..914 | 95 | <- | Minus |
3R | 27066099..27066480 | 352..733 | 99 | <- | Minus |
3R | 27066608..27066884 | 75..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:16 Download gff for
FMO10913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22891572..22891753 | 734..914 | 95 | <- | Minus |
arm_3R | 22891821..22892202 | 352..733 | 99 | <- | Minus |
arm_3R | 22892330..22892606 | 75..351 | 100 | <- | Minus |
arm_3R | 22894866..22894938 | 1..74 | 96 | | Minus |