Clone FMO10913 Report

Search the DGRC for FMO10913

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:13
Vector:pMK33-CFH-BD
Associated Gene/Transcriptspz-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10913.5prime Sequence

924 bp (924 high quality bases) assembled on 2011-11-18

> FMO10913.5prime
CAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAGTCCTGCTG
CTGCTGTTCGCCTTCTTTGCCACGACGTCCGCGGACAGTGCACCCTTCAT
GCCCATACCCACCCAGCACGACGATCCGACCCAGAAACAGAAACAGAATC
AGAATCAATCTCCGATACCCGAAACGAACCGCCATTACCATCAGTATCAC
AGCCTGATCCAACCAGATCAGTACTTCAAAGTGCAGCGCTCCCCGAATGG
AAAGCTGAATCTGGTCTTTAACGATACGTTCGTATCTTTGCAGAGGACGG
ACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATCCATCGGAT
ACCTTTGTCTTCCCCGATTCCCCCATAGCCAAGTATCGGCCACCACAATC
CCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACAATCCCTGCGCCA
AGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGGACGACTAT
CCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAACTTCGCCAAGTT
CTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTCGCGTTGGTGGCT
CAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTGGTGTACCCAAAA
AAGGGCTTGAGGGCGGACGACACCTGGCAGTTAATTGTCAATAACGATGA
GTACAAACAGGCCATCCAGATCGAAGAGTGCGAAGGAGCGGATCAACCCT
GTGACTTTGCCGCCAACTTTCCGCAGAGCTATAATCCAATCTGCAAGCAG
CACTACACACAGCAGACCCTGCCCAGCATCAAGAGTGATGGCGAACTGGA
CGTGGTGCAGAATTCCTTCAAGATCCCCTCCTGCTGCAGTGCGCGTTGAA
GACTGGGGCAAGCTTCTAGACCAT

FMO10913.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
spz-RB 2050 CG6134-RB 861..1761 8..907 4375 99.1 Plus
spz-RA 2128 CG6134-RA 1006..1839 75..907 4040 99 Plus
spz-RD 1969 CG6134-RD 1063..1680 291..907 2960 98.7 Plus
spz-RA 2128 CG6134-RA 861..927 8..74 335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27066099..27066480 733..352 1865 99.2 Minus
3R 32079331 3R 27066608..27066885 351..74 1390 100 Minus
3R 32079331 3R 27065857..27066031 907..734 765 97.1 Minus
3R 32079331 3R 27069144..27069210 74..8 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:42:48 has no hits.

FMO10913.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:07 Download gff for FMO10913.5prime
Subject Subject Range Query Range Percent Splice Strand
spz-RB 849..1766 1..914 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:16 Download gff for FMO10913.5prime
Subject Subject Range Query Range Percent Splice Strand
spz-RB 851..1768 1..914 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:42 Download gff for FMO10913.5prime
Subject Subject Range Query Range Percent Splice Strand
spz-RB 851..1768 1..914 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:42 Download gff for FMO10913.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27069144..27069216 1..74 96   Minus
3R 27065850..27066031 734..914 95 <- Minus
3R 27066099..27066480 352..733 99 <- Minus
3R 27066608..27066884 75..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:16 Download gff for FMO10913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22891572..22891753 734..914 95 <- Minus
arm_3R 22891821..22892202 352..733 99 <- Minus
arm_3R 22892330..22892606 75..351 100 <- Minus
arm_3R 22894866..22894938 1..74 96   Minus