FMO10915.5prime Sequence
1116 bp (990 high quality bases) assembled on 2011-11-18
> FMO10915.5prime
CAGTCGACATGCTTAATGCGCGTGACGTGTGTCCTGAGGGCAACGACGAC
CAGCAGTTGGACCACAATTTTAAGCAGATGGAGGAGCATTTGGCCTTAAT
GGTGGAAGGCAATGAAAACGAAGATCCGAGGAAAGCCACTTGTGAGTACG
AGGATACGAACGAAGATGGTGCAACCTGCACATCGGGCGTTTTATCCGAA
ATCCAGGAGAACTTCGGTAGACTCCGGTTGTGTGACGTTACTGCACCACT
CCTCGAATTCCACGGTTTGGATTGCTTGCAACAGATTCAAAAGCGCTCGC
GCCATTTTGCATTCGACGGTTCTCCGGCCAAGAAGTCGCGATCCGGAGGC
GTGTTGGTCACCGGGCCAAAGCAGAAGCAACTGCAGAAGGAAAATGTGTG
GAACCGGAAGAGTAAAGGCTCTGCGTCCGCGGATAATATTGAGAAACTGC
CCATAACTATTGAGAAACTGCATATGATTGGTCTGCACGGCGATTGCTTA
GAGCACAACGCCGTGCTGCGTTTGATGAATCTGTTCAGATCCCTGCATGA
TCACCTGACCGCCGATTTGGGCTTCTCGCGCCAAAACTCAATGCCCTCGG
ACTATCTGTTCGATATGCCGGTGAAGAGCACGATGCCTAAGAGCTTGAAT
GTGCGCTACCAACTGCAGGTGCTGTGCACCAAAGTAGAGCGCTTCCTTGT
CCAGCAGCGCCGCACCTTGGAGGCGAATCGCCACTTCGATTTCGAGAAAT
ACGACGAGTGTGACAAGTTGCTTAAGGGTTTCGCATCCTATTTGGACAAC
TTCAAACTGCTTTTAAAGCCCAAAATGCGCAATCGAACGGAAACTCGGGG
AGCAATGCGGACAAGTTCCATACTCAGCGCATGGAGAGATTGCTAATTGG
TCTGCGCGATTGGATCAAGCTGCGCATCTCATGTGCACGTAATTTAACTG
GGAAATGGATCTGGAGCACCGCTACTCCGGGGCCATGACCCGAAGCCACA
GTCGTTGAACGAGCGGGCCATCCTTTTGTCCGTGCCGAGCTTAAGGCCGC
CGAAGCCCGTGGAAATCAGTGCCGAGGAATTCTGTTCATCCGCCCTCGCA
ACAACCTGGGAGTCCG
FMO10915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bam-RA | 1894 | CG10422-RA | 82..1164 | 9..1090 | 5100 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25244489..25244976 | 496..9 | 2425 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25244054..25244425 | 866..496 | 1810 | 99.7 | Minus |
| 3R | 32079331 | 3R | 25243779..25243992 | 1078..867 | 675 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:42:56 has no hits.
FMO10915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:08 Download gff for
FMO10915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 187..1273 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:21 Download gff for
FMO10915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..1168 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:44 Download gff for
FMO10915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..1168 | 9..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:44 Download gff for
FMO10915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25243825..25243992 | 867..1032 | 96 | <- | Minus |
| 3R | 25244054..25244424 | 497..866 | 99 | <- | Minus |
| 3R | 25244489..25244976 | 9..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:21 Download gff for
FMO10915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21069547..21069714 | 867..1032 | 96 | <- | Minus |
| arm_3R | 21069776..21070146 | 497..866 | 99 | <- | Minus |
| arm_3R | 21070211..21070698 | 9..496 | 99 | | Minus |
