FMO10921.5prime Sequence
737 bp (737 high quality bases) assembled on 2011-11-18
> FMO10921.5prime
CAGTCGACATGAAGGCAGCAATAATTTTGGCACTAATCGGTACAGTTTTG
ACGGCTCCGCCAGTCAGGGTGATGCCGAAACCAGGCAGTGAGCTTGATCA
GTACGCTCACATATTTGCAAAGGTACGACCACCGGGCCAGAAGCACCAGA
ACATGGAGATTGAATTCCAGCCACAGCACCACAACTCTCTGCCGAGCAAC
CAGGTCAATGCGGAAATCAATCATGTGGAGCCCAAGCAGCCTCAGTACAT
GGAACAAAGTTCTTCTCAGGTCGAGTCGAGACCTCCTCACACCGTGGACT
TTGAGATCAAGCCGGTGGAGCAGAAGCCACCCCAGCGATTGGAGTTTGAG
GTGAAGCCGCAGCACGAGCAAAACTCTCCTCAGGGACATTTGGTTTCTTT
GGGCGTCAAGCCCGTGGAGCAGAAGCCACCTCAGCACTTGGAGGTGGAGA
TTAAGCAGCAGCAGCAACAACATTCTTCGCAAAATCATCAGGTGGAACTG
GAAATCAAGCAGGTGGAACAGAAGCCTCCACAGCACTTGGAAATTGAGAT
CAAGCCTGTTGACCAGAAGCCACCGCACCGTGTGGAGCTTGAAGTCCAAC
AGCAGCATCACCAAAACTCTGCCCAGGGACACTTGGTTTCTTTGGGAGCA
GTGGAACAGAAGCAACAACACATCGATCATGAGCTGAAGAATTCCCATAA
AATCGAGCTAGAATTTGTTGCAAGCTTTCTAGACCAT
FMO10921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12934-RB | 943 | CG12934-RB | 25..735 | 9..719 | 3555 | 100 | Plus |
| CG12934-RA | 858 | CG12934-RA | 25..735 | 9..719 | 3555 | 100 | Plus |
| CG12934-RB | 943 | CG12934-RB | 317..419 | 544..646 | 230 | 81.6 | Plus |
| CG12934-RB | 943 | CG12934-RB | 560..662 | 301..403 | 230 | 81.6 | Plus |
| CG12934-RA | 858 | CG12934-RA | 317..419 | 544..646 | 230 | 81.6 | Plus |
| CG12934-RA | 858 | CG12934-RA | 560..662 | 301..403 | 230 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10648912..10649622 | 9..719 | 3555 | 100 | Plus |
| 2R | 25286936 | 2R | 10649204..10649306 | 544..646 | 230 | 81.6 | Plus |
| 2R | 25286936 | 2R | 10649447..10649549 | 301..403 | 230 | 81.6 | Plus |
Blast to na_te.dros performed 2014-11-27 20:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6996 | 418..610 | 177 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6888 | 454..616 | 162 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2509 | 454..613 | 161 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2559 | 418..634 | 156 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6934 | 418..632 | 149 | 53.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6858 | 416..535 | 133 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6946 | 418..572 | 131 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6876 | 416..535 | 125 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2684 | 416..508 | 118 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1143 | 454..535 | 115 | 62.2 | Plus |
FMO10921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:11 Download gff for
FMO10921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12934-RA | 22..740 | 1..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:43 Download gff for
FMO10921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12934-RA | 17..735 | 1..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:58 Download gff for
FMO10921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12934-RA | 17..735 | 1..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:58 Download gff for
FMO10921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10648904..10649622 | 1..719 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:43 Download gff for
FMO10921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6536409..6537127 | 1..719 | 99 | | Plus |
