FMO10923.5prime Sequence
1130 bp (1035 high quality bases) assembled on 2011-11-18
> FMO10923.5prime
CAGTCGACATGGCTTTCGCCGGACTCAAAAAGCAGATCAACAAGGCCAAC
CAGTATATGACGGAGAAGATGGGCGGTGCCGAGGGCACCAAACTGGACAT
GGACTTCATGGAGATGGAACGCAAGACGGACGTCACCGTGGAGCTAGTGG
AGGAGCTGCAGCTAAAGACGAAGGAGTTCCTGCAGCCGAATCCAACGGCA
CGGGCCAAAATGGCAGCGGTCAAGGGCATCTCGAAGCTGTCCGGACAGGC
CAAGTCCAATACGTATCCGCAACCGGAGGGCCTGCTCGCGGAATGCATGC
TGACTTATGGGAAGAAGCTCGGCGAGGACAACAGCGTGTTCGCGCAGGCG
CTCGTCGAATTCGGCGAAGCGCTGAAACAGATGGCCGACGTCAAGTATTC
GCTGGACGACAACATCAAGCAGAACTTTTTGGAGCCACTGCATCATATGC
AGACCAAAGACCTCAAGGAGGTAATGCATCATCGCAAGAAGCTGCAGGGC
CGGCGGCTAGACTTTGACTGCAAGCGTCGCCGACAGGCCAAGGACGATGA
GATTCGTGGTGCCGAGGACAAGTTCGGTGAATCGCTCCAGCTGGCCCAGG
TGGGCATGTTCAATTTGCTCGAGAACGATACGGAGCATGTCTCCCAGCTG
GTCACCTTTGCCGAGGCACTATACGATTTTCATTCGCAATGCGCGGATGT
CCTTCGAGGCCTGCAGGAGACACTGCAGAGAAGCGCTCCGAGGCGGAGAG
CCGGCCACGCAACGAGTTCGTGCCCAAGACGCTGCTCGATCTGAACTTGG
ACGGCGGTGGCGGCGGCCTCAACGAAGATGGCACGCCGTCTCACATTAGT
TCGAGCGCCTCGCCGTTGCCCTCGCCGATGCGTTCGCCCGCCAAGTCGAT
GGCCGTAACGCCGCAGCGCCAGCAGCAGCCCTGCTGCAGGCCCTCTACGA
CTTCGAGCCGAAGAATCCCGGCGACCTGGCCCTTCAGGAAGAACGACATT
ATTCACCCTGTTGATCGCGTCGACGACATTGGGTTCCGGAGGGCGCGATG
ATGACGCACCCGTTACTCCCGCAGTCGTTGTCAGGTGGCAGGTCCCTGCC
ATGGCAACGCCAGCTTCTAGACATTCGTTG
FMO10923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoA-RC | 3913 | CG14296-RC | 479..1586 | 8..1108 | 5035 | 97.7 | Plus |
| EndoA-RB | 3740 | CG14296-RB | 658..1765 | 8..1108 | 5035 | 97.7 | Plus |
| EndoA-RA | 3561 | CG14296-RA | 479..1586 | 8..1108 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18907266..18908295 | 8..1036 | 4820 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:30 has no hits.
FMO10923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:06 Download gff for
FMO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoA-RB | 650..1754 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:09 Download gff for
FMO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoA-RA | 472..1576 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:34 Download gff for
FMO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoA-RA | 472..1576 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:34 Download gff for
FMO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18907259..18908363 | 1..1100 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:09 Download gff for
FMO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14732981..14734085 | 1..1100 | 97 | | Plus |
