FMO10929.5prime Sequence
981 bp (981 high quality bases) assembled on 2011-11-18
> FMO10929.5prime
CAGTCGACATGCACCAGGAGCACATGGACCTGCATGAGCCCGTGGACTTG
AACAAGTCCCTGGACGAAATGACGCCGGAGGAGCGAATGCGAGCGCAGCA
TCAACTGATGGTGGAGAAACATCGCGGCCACGATGCCATGCACTCCGAGA
TGGTGATCATTCTGTTCGTCACCCTGGTTATTGCCCAGATCATCCTGGTC
GAGTGGAAGAAGCGGCACTACAGATCCTACGCTTTCGTCACCCTGCTGGC
CATGTGGCTCATTCCGCTGATCATCTCCTGCAGCTTCGGCTGGCTGCGCT
TCATAATCATCTGGCTGGTGTTCACCTGCATCACGGCACTGGTTATGCGA
CGGGCCATCAGCAAGCCCATCCAGGGCACAACGCCTAGGCTGGTCTACAA
GTGGTTCTACTTCATCTACAAGCTCAGCTATGGCCTTGGCCTGGTGGGCT
ATCTGGTGATCATAGCCGCCTTTCTGGGCATGAATTACATGTTCTCACAG
CCACCAAACACATGGATGGATGTGGGCCTGATGTTCTGCTTCTACGGCCT
GTACATCGGCGTCCTGGGGCGTGATATATCCGAGATATGTTCGGATAAGA
TGGCGGCAGCTATTGGCTACTACACACCTCAGGGTATTCCAACACGACAT
CTTGATCAGAATGTCTGCGCAGTGTGTGGCAATCAGTTGCTGGTCTCGGA
GAAGGAAGAGGGCGTCATTGAGAACACCTACAAGTTGTCTTGTAACCACG
TATTCCACGAGTTCTGTATACGTGGTTGGTGCATTGTGGGCAAGAAGCAG
ACGTGTCCCTACTGCAAGGAAAAGGTCGATCTCCAGAGATGTTCCGCAAT
CCCTGGAGAAGCCGCACGTTTTGTACGGTCGCCTGCTGGATTGGATTCGT
TGGCTGGTGGCCTGCAGCCGCTCATCTTTTCATAGTACAGCATCACTGGA
TGCTGGGACTGGAGGCAAGCTTTCAGACCAT
FMO10929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15814-RC | 1740 | CG15814-RC | 244..1206 | 9..964 | 4650 | 99.3 | Plus |
| CG15814-RA | 1884 | CG15814-RA | 388..1350 | 9..964 | 4650 | 99.3 | Plus |
| CG15814-RB | 1664 | CG15814-RB | 168..1130 | 9..964 | 4650 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17849413..17849711 | 389..91 | 1495 | 100 | Minus |
| X | 23542271 | X | 17849117..17849347 | 617..387 | 1155 | 100 | Minus |
| X | 23542271 | X | 17848819..17849054 | 852..618 | 1130 | 99.6 | Minus |
| X | 23542271 | X | 17848644..17848758 | 964..855 | 360 | 95.7 | Minus |
| X | 23542271 | X | 17849908..17849955 | 56..9 | 240 | 100 | Minus |
| X | 23542271 | X | 17849776..17849812 | 91..55 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 263..299 | 283..247 | 113 | 78.4 | Minus |
FMO10929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:15 Download gff for
FMO10929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RC | 172..1141 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:08 Download gff for
FMO10929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 161..1130 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:17 Download gff for
FMO10929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 161..1130 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:17 Download gff for
FMO10929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17848819..17849054 | 618..852 | 99 | <- | Minus |
| X | 17849414..17849710 | 92..388 | 100 | <- | Minus |
| X | 17849776..17849810 | 57..91 | 100 | <- | Minus |
| X | 17849908..17849962 | 1..56 | 92 | | Minus |
| X | 17849117..17849345 | 389..617 | 100 | <- | Minus |
| X | 17848645..17848761 | 853..963 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:08 Download gff for
FMO10929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17742678..17742794 | 853..963 | 94 | <- | Minus |
| arm_X | 17742852..17743087 | 618..852 | 99 | <- | Minus |
| arm_X | 17743150..17743378 | 389..617 | 100 | <- | Minus |
| arm_X | 17743447..17743743 | 92..388 | 100 | <- | Minus |
| arm_X | 17743809..17743843 | 57..91 | 100 | <- | Minus |
| arm_X | 17743941..17743995 | 1..56 | 92 | | Minus |
