FMO10930.5prime Sequence
1116 bp (1017 high quality bases) assembled on 2011-11-18
> FMO10930.5prime
CAGTCGACATGGCGGATAAAGTAAATGTGTGCATTGTGGGCTCCGGCAAC
TGGGGTTCGGCCATAGCGAAAATCGTGGGCGCCAATGCCGCCGCTCTGCC
GGAGTTCGAGGAGCGTGTGACGATGTTCGTCTACGAGGAGCTCATCGATG
GCAAGAAGCTGACGGAGATTATCAACGAGACGCACGAGAACGTCAAGTAC
CTGAAAGGACACAAGCTGCCCCCGAATGTGGTTGCCGTGCCCGACCTGGT
TGAGGCCGCCAAGAACGCTGACATCCTGATCTTCGTGGTGCCCCACCAGT
TCATTCCCAACTTCTGCAAACAGCTACTGGGCAAGATTAAGCCAAATGCC
ATCGCTATCTCCCTGATCAAGGGCTTCGACAAGGCCGAGGGCGGCGGCAT
CGATCTGATCTCGCATATAATCACGCGTCACCTGAAGATCCCATGCGCCG
TGTTGATGGGCGCAAACCTGGCCAACGAGGTGGCTGAGGGCAACTTCTGC
GAAACGACAATCGGCTGCACGGACAAGAAGTATGGCAAGGTGCTGCGCGA
TCTCTTCCAGGCGAACCACTTCCGCGTGGTGGTCGTGGACGATGCTGATG
CCGTGGAGGTTTGCGGTGCCCTCAAGAACATCGTGGCCTGCGGCGCTGGC
TTTGTTGATGGCCTCAAGCTGGGCGACAACACCAAGGCGGCTGTCATCCG
GCTGGGCCTCATGGAGATGATTCGCTTCGTGGACGTCTTCTATCCCGGAA
GCAAGCTGTCCACCTTCTTCGAGAGCTGCGGCGTGGCCGATCTGATCACG
ACGTGTTACGGTGGCCGTAACCGCCGCGTCTCTGAGCGTTTGTGACTTCT
GGAAAACCATTGAGGAGCTGGAGAAGGAATGCTCAACGGCCAGAAGCTGC
AGGCCCACCCACTGCCGAGAGTCAACTACATGCTGAAGAAACAAGGGTCT
GGAGGACAAATTCCCCCTGTCACGGCTTATTCACAAATTATGCACAATCA
GCTCAGCCCTAATGATTTATGAATTGCCTAACGCAATCACCCTGACATAT
GGATACGTCCATCATGCGTCGCCCAACCTTGCAAGCCTTCAGAACATCGT
TTGGGCGCGGTCCAGT
FMO10930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpdh-RF | 2503 | CG9042-RF | 468..1547 | 9..1080 | 4945 | 98 | Plus |
| Gpdh-RB | 1651 | CG9042-RB | 146..1225 | 9..1080 | 4945 | 98 | Plus |
| Gpdh-RG | 2078 | CG9042-RG | 468..1517 | 9..1051 | 4850 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5946314..5946690 | 436..812 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 5946043..5946250 | 230..437 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 5944267..5944447 | 52..232 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 5947017..5947171 | 810..959 | 450 | 94.9 | Plus |
| 2L | 23513712 | 2L | 5944110..5944154 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:41 has no hits.
FMO10930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:16 Download gff for
FMO10930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 429..1511 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:11 Download gff for
FMO10930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1228 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:19 Download gff for
FMO10930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1228 | 9..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:19 Download gff for
FMO10930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5944110..5944153 | 9..52 | 100 | -> | Plus |
| 2L | 5944268..5944445 | 53..230 | 100 | -> | Plus |
| 2L | 5946044..5946250 | 231..437 | 100 | -> | Plus |
| 2L | 5946316..5946688 | 438..810 | 100 | -> | Plus |
| 2L | 5947018..5947171 | 811..959 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:11 Download gff for
FMO10930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5944110..5944153 | 9..52 | 100 | -> | Plus |
| arm_2L | 5944268..5944445 | 53..230 | 100 | -> | Plus |
| arm_2L | 5946044..5946250 | 231..437 | 100 | -> | Plus |
| arm_2L | 5946316..5946688 | 438..810 | 100 | -> | Plus |
| arm_2L | 5947018..5947171 | 811..959 | 95 | -> | Plus |
