FMO10932.5prime Sequence
1082 bp (974 high quality bases) assembled on 2011-11-18
> FMO10932.5prime
CAGTCGACATGGCCGACAAAGCTGCAGCGCCCTCTGTGGACTGTGCGGCG
CCATCTGTGGACTGTGCGACGCCTGCAATACCAGCCGTGGAGGATCACAC
CACGCTGACCGTTCCACCTGCTTCAGCGAACAAAGCCACGGACGCTTCCA
CTTCCACTGCCGTCCAAGTGGCCGTCGATGGGGGGGAGCCGGAACGCTGC
TGCTGGATCTGCTTCGCCACCGATGAGGACAACCGTCTGGCGGCGTGGGT
GAAGCCCTGTCAGTGCCGCGGCACCACCAAGTGGGTGCACCAGAGCTGCC
TCTACCGCTGGATCGATGAAAAAACCCAGAAGGGTAACGCTCTACGCACT
GTATCGTGTCCGCAGTGCCAAACGGAGTACATCATAGTGTTCCCGCAGAT
GGGCAAGCTTGGAGGTGCTTTAGAGGCAATAGATAACCTCATCAAGCGCC
TGAGCCCCTTCCTGGCGGCTGGTTTCTTCGTGGGCTCCCTCTACTGGACA
GCAGTAACTTACGGAGCAGTCACATTTTTACAGATTGTCGGACATGAGCA
CGGCATGTCCATAATGGAGTCTGGAGATCCGCTCGTTCTCCTTATTGGGT
TGCCGGCTATTCCAGTGGGGCTTGTGCTTGGTCGATTGATTCGCTGGGAG
GATGCATTGTTGCGTCTTATTCGAAACCGCGGGACGGTGGTGCGGAAGTT
TCCTTTTGTAAGCCTTATTTATCCGAACCTCAGCCAGGAAGAGGAACAGC
AAAGCATCAGCAATCCGGCCACACCGGCTCTCTCTGACCCTGTCTCAGCC
ACGAGGGTCTTCTGCGGCGCTCTCTTGCTGCCCACCATATCGTCGATCGT
GGGACGTATTCTCTTTGACACGGTTGATAACACATTGCATCGTACTCTGC
TTGGAAGGTCTGACCTTTATAACGGTCAAGGAATTCTGAAAATTTATTTG
AAGCAGAACAGTACGGCCGCCCGCAGAGCGCCGAATTGGTGACTACACTG
AGAAATATTCGACTCATGCACCGCACATACTCGCAGCACGGCCCGGCAGA
AAGCTGCGAGCTAGCATGCCACCACCGACCAA
FMO10932.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9855-RC | 1718 | CG9855-RC | 169..1225 | 5..1049 | 4855 | 98.1 | Plus |
| CG9855-RA | 1533 | CG9855-RA | 169..1225 | 5..1049 | 4855 | 98.1 | Plus |
| CG17991-RA | 1064 | CG17991-RA | 122..316 | 191..385 | 210 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4397112..4397640 | 533..5 | 2630 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4396529..4396802 | 1002..731 | 1100 | 96.7 | Minus |
| 3R | 32079331 | 3R | 4396860..4397058 | 730..532 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 27241388..27241582 | 191..385 | 210 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:55 has no hits.
FMO10932.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:17 Download gff for
FMO10932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 177..1230 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:18 Download gff for
FMO10932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 165..1218 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:25 Download gff for
FMO10932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 165..1218 | 1..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:25 Download gff for
FMO10932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4396479..4396802 | 731..1042 | 94 | <- | Minus |
| 3R | 4396860..4397056 | 534..730 | 100 | <- | Minus |
| 3R | 4397112..4397643 | 1..533 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:18 Download gff for
FMO10932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 222201..222524 | 731..1042 | 94 | <- | Minus |
| arm_3R | 222582..222778 | 534..730 | 100 | <- | Minus |
| arm_3R | 222834..223365 | 1..533 | 99 | | Minus |
