FMO10935.5prime Sequence
1135 bp (1030 high quality bases) assembled on 2011-11-18
> FMO10935.5prime
CAGTCGACATGGTGGGAATTATCGATGAGGTGCAGCTTTTTTATCCCCTA
GGAACCCGCATCAAAATTGGGGACAACTACGGCACAGTGCGTTATGTGGG
AGAGGTGAGCGGCCATATGGGTAGCTGGCTGGGAATAGAATGGGACGACG
GACTGCGTGGCAAACACAACGGCATCGTGGACGGCAAGCGCTACTTTCAG
ACGCAGACACCCACGGGAGGCAGCTTCATCCGACCGGGAAAGGTAGGGCC
TTGTGCCACCCTGGAGGACGCTGCTCGGGAGCGGTACCTAAACTACGACT
CGAGCAACGTCGACGAGTCTCTTATCCGGGAAGCTCAGGCCAGCCTGCAG
GCGTCGCTTTTTGAAGTCGTGGGCATGGACAAGATCGCTCGCAAGCAAAG
CAAGTTCGAGCAACTGGAGGAGGTGAGTGTAGACCAGACGCCGGTAAACG
CTGCCGGTTACCTGAAGGAGTTGACACACCTCACAACGTTGAACGTAAGC
CATACCTTAATCTGGAATTGGGAGATCGTGGCCAGTATAGCGCAACAGCT
ACCCTCCTTAACCAACCTGAACCTGAGCTCCAACCGATTGGTCCTGCCCA
CGTCATCCCAAATCACTGAGCTTGAGCCCTCATTTCGGCAGCTCAAACGC
ATCAACCTTCGCAGTTGTGGCTTTTCCGACTGGAAGGATGTAATGCACAC
AGCGCTTCTCTGGCCAAATATTTTGTCACTGGGCTTACAGGAGAATTCAC
TCGGCCAGCTAGCAGAAGTCGATCGAACAAAGATATTTAAGCAGCTACAT
GAACTCGACTTACACCGCACGAACATTATGGATTTTGACCAGGTGACAAA
GTTGGGCAACCTCACGACTTTGCGCTTACTGAATATCATGGAGAATGGTA
TCGAGGAGATAAACTTCCCGACTGTGATTCACAAGAAAAGCTTAATATTT
TTGGTCTCGCTGGAGCAGCTGAACCTGCTTCACATCCCATTTGGAATGAG
GCTGATGCGTTTACGGAGCTGGACAGCTGCCACAGCTGAACGCCTGATAG
ACTCGGACTAAGGTCAACCTTTGATGGAATGTCTCCAAGCCTGTAGCTAG
CCATAGCAGCTGCAGTTCATAATAAGCCAGGTCAC
FMO10935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbce-RC | 2144 | CG7861-RC | 338..1464 | 9..1125 | 5145 | 97.9 | Plus |
| Tbce-RB | 2080 | CG7861-RB | 274..1400 | 9..1125 | 5145 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6043091..6043565 | 103..577 | 2345 | 99.6 | Plus |
| 2R | 25286936 | 2R | 6043613..6044039 | 576..1001 | 1990 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6042928..6043029 | 9..110 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:43:59 has no hits.
FMO10935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:13 Download gff for
FMO10935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tbce-RB | 269..1330 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:51 Download gff for
FMO10935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tbce-RB | 269..1330 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:05 Download gff for
FMO10935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbce-RB | 269..1330 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:05 Download gff for
FMO10935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6042923..6043023 | 1..104 | 96 | -> | Plus |
| 2R | 6043093..6043565 | 105..577 | 99 | -> | Plus |
| 2R | 6043615..6044038 | 578..1000 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:51 Download gff for
FMO10935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1930428..1930528 | 1..104 | 96 | -> | Plus |
| arm_2R | 1930598..1931070 | 105..577 | 99 | -> | Plus |
| arm_2R | 1931120..1931543 | 578..1000 | 99 | -> | Plus |
