FMO10937.5prime Sequence
1088 bp (961 high quality bases) assembled on 2011-11-18
> FMO10937.5prime
CAGTCGACATGTTGCCGGTAATCCTCATAGCCTGCCTGGCCCAGCTGGTA
CTGGCTCAGGCGGATCTTAAAGATCTGGATGGACCCAATATCTGCAAAAG
AAGAGAACTATATAACGTAGACGTTGTCTACACAGAACTGCAATCGTTCC
AGGAACGGGGCTCCACCTGGTGCGTCACATTCCCGCCGAGGTGCTCCACC
TATCGCATTAAACACCGAGTGGTCAACAAAACCAAGACGATTGCAAAGAA
CCGTATTGTGAGGGACTGTTGTGATGGCTACATCGCGAGCGCAGGAGAAT
GCGTGCCGCATTGTTCGGAACCCTGCCAGCACGGTAGATGCATCTCCCCG
GAGAAGTGCAAGTGTGATCATGGTTACGGAGGACCCGCCTGCGATATAAT
TTGCAGATGCCTGAATAACTCCTCCTGCGACCCCGATTCCGGTAACTGCA
TCTGCTCAGCCGGTTGGACTGGCGCCGACTGTGCGGAACCCTGCCCACCT
GGATTCTACGGCATGGAATGCAAGGAACGGTGCCCGGAGATCCTCCATGG
CAACAAGAGCTGCGATCACATCACAGGTGAAATTCTCTGCCGCACGGGTT
ACATAGGTCTCACCTGCGAGCACCCATGTCCTGCTGGACTCTACGGACCC
GGCTGCAAGCTCAAGTGCAATTGCGAGCACGGCGGCGAGTGCAACCACGT
TACAGGCCAGTGCCAGTGCCTGCCAGGGTGGACAGGTTCCAACTGCAACG
AGTCCTGTCCCACAGACACCTACGGACAAAGATGCGCCCAGCGGTGCCGC
TGCGTGCACCACAAGTTTGCCGCAAGGCCGACGGTATGTGCATCTGCGAA
CCCGGCTGGTCGGGCACCCGGTGCGATGAGGTCTGTCCGGAAGGGATTCT
ACGGCGAGCACTGCATGAATACCTGTGCCTGTCCGTCGGCCAATTTCTAG
TGCAAGGCGGCCCACAGTTGTTTGTGCAAGAGTGGCTCACCCGGCGATAA
CTGCGACGAGCTAATCGCTCTCACGTATGCAGAACAAGCGAAATTCAGAC
CGGGGAAAGTAGCTCTGACCTTAGTCTGGAGAGACTGT
FMO10937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drpr-RC | 3298 | CG2086-RC | 716..1790 | 8..1076 | 4925 | 97.9 | Plus |
| drpr-RA | 3206 | CG2086-RA | 716..1790 | 8..1076 | 4925 | 97.9 | Plus |
| drpr-RF | 4757 | CG2086-RF | 2445..3134 | 393..1076 | 2970 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1717411..1717880 | 1018..549 | 2090 | 97.2 | Minus |
| 3L | 28110227 | 3L | 1723770..1723933 | 273..110 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 1717946..1718103 | 550..393 | 760 | 98.7 | Minus |
| 3L | 28110227 | 3L | 1723580..1723706 | 399..273 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 1723992..1724093 | 109..8 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:45:10 has no hits.
FMO10937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:19 Download gff for
FMO10937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 693..1784 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:26 Download gff for
FMO10937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 707..1798 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:31 Download gff for
FMO10937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 707..1798 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:31 Download gff for
FMO10937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1717947..1718096 | 400..549 | 100 | <- | Minus |
| 3L | 1723580..1723705 | 274..399 | 100 | <- | Minus |
| 3L | 1723770..1723933 | 110..273 | 100 | <- | Minus |
| 3L | 1723992..1724096 | 1..109 | 96 | | Minus |
| 3L | 1717379..1717879 | 550..1045 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:26 Download gff for
FMO10937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1717379..1717879 | 550..1045 | 96 | <- | Minus |
| arm_3L | 1717947..1718096 | 400..549 | 100 | <- | Minus |
| arm_3L | 1723580..1723705 | 274..399 | 100 | <- | Minus |
| arm_3L | 1723770..1723933 | 110..273 | 100 | <- | Minus |
| arm_3L | 1723992..1724096 | 1..109 | 96 | | Minus |
