FMO10939.5prime Sequence
1072 bp (958 high quality bases) assembled on 2011-11-18
> FMO10939.5prime
CAGTCGACATGTTGGACTTTGTGGTGATATTCACCAAGGGCGGAGTGGTG
CTGTGGCACTCGAACGCGTCCGGTAACAGTTTCGCCTCCTGCATCAACAG
CCTGATACGTGGCGTCATTCTGGAGGAGCGCAACACAGAGGCCAAGTACT
ACGAGGAGGACCACCTGGCCGTGCAGTTTAAGCTGGACAACGAACTGGAC
CTGGTCTATGCGGCCATTTTCCAGAAGGTGATCAAACTGAACTACCTAGA
TGGATTCCTGGCCGACATGCAGGCGGCCTTCAAGGAAAAGTACGGCGACA
TACGTCTGGGCGATGACTACGACTTCGATCGCGAATATCGACGCGTGCTC
AGCGCCGCGGAGGAGGCGTCCGCCAAGCAAGTGAAAGCACCTAAAACCAT
GCGCTCCTACAACGAGTCACAGAAATCGAAAAAGACCGTCGCCTCGATGA
TACAGGACGACAAGAAGCCGGTGGAGAAGCGGGTGAACATCCAGGAGGCC
CCGCCACCATCCAAATCACAGCCGTCGTCGCCACCGACGGGCTCCCCAAT
GGACAAGATCATCATGGAGAAACGGCGCAAGCTGCGCGAAAAGCTCACGC
CCACCAAGAAGACCTCGCCCAGTGATTCCAAGTCCAGCAAGCCCGAGAAG
GCCGGCAAGAAGCCACGCGTCTGGGATCTGGGCGGTAATTCCAAGGATGC
CGCTCTGCTCGATCGCTCCAGGGATTCGCCCGATGATGTGCAGTACCAGA
ACATCAACAGCGAGCTGGTGGGCACAATGCAGGGCGTCATCCGCGACTTG
GATGTGGAGAGCGAGGACGAGGCTGACAACGAGGATGCATCCTCTGAGGG
GAGGCCGAGGAGCAGTGCAGTCAAAGAGGCAGCGCGGTGGCCTGCCTATC
CTACTTCAAGGCATTGTAGCGCCAAGACATGTCGCTGGGAGATTGCCAGC
GGCGCTGGAGAGAATGCCCGACCATTCTGATATTCGAAGACGTGGCTCTG
AAATAGACAGCTAAGCCTGTGCGAACTCCGGTGGCGCCGTTGATGCCAAG
CAATTGGCCATCGACGCATCGC
FMO10939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gtp-bp-RA | 2056 | CG2522-RA | 114..1170 | 9..1057 | 4655 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11128151..11128795 | 764..120 | 3210 | 99.8 | Minus |
| X | 23542271 | X | 11128857..11128974 | 126..9 | 590 | 100 | Minus |
| X | 23542271 | X | 11127845..11128065 | 975..763 | 560 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:45:18 has no hits.
FMO10939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:19 Download gff for
FMO10939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 130..1168 | 9..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:30 Download gff for
FMO10939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 114..1152 | 9..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:34 Download gff for
FMO10939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 114..1152 | 9..1041 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:34 Download gff for
FMO10939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11128151..11128789 | 126..764 | 100 | <- | Minus |
| X | 11128858..11128974 | 9..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:30 Download gff for
FMO10939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11022184..11022822 | 126..764 | 100 | <- | Minus |
| arm_X | 11022891..11023007 | 9..125 | 100 | | Minus |
