FMO10942.5prime Sequence
1095 bp (987 high quality bases) assembled on 2011-11-18
> FMO10942.5prime
CAGTCGACATGCGTTCCGAAATATCTTGCTCCATGGTGCACGATCTGCTG
GAGTCACAAAAATGCAAATTTGTGCAAACGACACCTGATTGTCTAATCAA
TATGAATTTGTTCAACTACCTGGGATGGCATTATTGCAAGGTGGATGTCC
GAAATAGTTTCAATTCCTTCTGGAGTGTGTTGGGCATGTTTCTGATTACC
ATTTATGTCTTCTGGATGATGCAAATAACAATAAAAAACTACTTCTGTCC
AACTTTGATGGTAATCGCAGACTTATTGCGAATGAACGAGAGCACGGCTG
GAGTTACAGTTCTGGCCATTGCAAATGGATCACCGGATTTCTTCACGGCG
ATTGCCTCGAGAGTGCAGACCTCCAAGCACTCATTCCTCTCGTGCATGTC
GCAGGCCATGTTTCTGCACATCTTTGTGGCCGGACTGGTGATCCTGACCA
AGCCCTTCAATATGCGGGCAAACACTTACCTGAGGGATTTCGGTTTCCTG
TTCCTCAATACGGTCTACATGGATTACATCCACAAGCGACCCAAGGGAAT
CAGCTGGCTAGCTGCGTTGCCCAGTGCCTTCATATTCGTTGGCTATGTGG
TGGTGGCCATCGTTGATCAGCATTTGCTGATTGCCCGCATTCAGAAAATG
GAGCAAAGACAACTGAATGTGGCTGAGGCGTTGCAGCTGGAGGAACTGAA
GCCGCAGAAGGAGATGCCACTGAAGCGGCAAGAAATCGATCGACCCTCCA
TTGGACACGGAAGTCGAAATAAGCGAATATTCCGGCAATTTTGGAATACC
GTTGCCGAATTCGACAAGGATCGATTTCATCGGGGAACCTTCCTGGTGAA
GCTGTATCTGATAGTGAAGCACCCATCGATATGTTGTGAGATACTCATTC
CAAAGTCGACATGGAGCACCCCAGTACGGATGGTCCAAGCTGCTCTTTAA
CATCCAGTGTTCTTGTACCCACTTACATAGCCTACATACTAGTTTGAGGG
ATTAGCATGCGGCTTAACCGTCTATTGAATGCGCTGATCCTATTGATCTG
TGGCTACTGGAAATTTTTCCCACGCGCATTGAACCCGCCATATTT
FMO10942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13223-RA | 1769 | CG13223-RA | 71..1174 | 9..1095 | 4910 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11256871..11257274 | 242..645 | 2020 | 100 | Plus |
| 2R | 25286936 | 2R | 11257325..11257678 | 646..992 | 1410 | 97.2 | Plus |
| 2R | 25286936 | 2R | 11256577..11256809 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:41 has no hits.
FMO10942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:21 Download gff for
FMO10942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1136 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:41 Download gff for
FMO10942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1136 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:44 Download gff for
FMO10942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1136 | 9..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:44 Download gff for
FMO10942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11256577..11256809 | 9..241 | 100 | -> | Plus |
| 2R | 11256871..11257274 | 242..645 | 100 | -> | Plus |
| 2R | 11257325..11257678 | 646..992 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:41 Download gff for
FMO10942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7144082..7144314 | 9..241 | 100 | -> | Plus |
| arm_2R | 7144376..7144779 | 242..645 | 100 | -> | Plus |
| arm_2R | 7144830..7145183 | 646..992 | 97 | -> | Plus |
