Clone FMO10944 Report

Search the DGRC for FMO10944

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5155-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10944.5prime Sequence

715 bp (614 high quality bases) assembled on 2011-11-18

> FMO10944.5prime
CAGTCGACATGATTGGCACTAGCAGCGGAACGTCCCACAATCGGAGTCGA
AAGAAGAAAGAACAGTGCGGATCCTGTCCCAACAGATTCTCAAAGGATAA
GCGCCAGGTGGCCGCCGAGGACTCGGATACCACGGAGGTGGAATCGTCTA
CGGATGAGGAGGAACGCTGGAAGGAAGTGGCGCGAGCCGCTGAGATTCCG
GCTGACTATTATAATATCCAAAAACTGGTGAAATACATCAAGGCGGGCAA
TCAGACAGCCACTATAGTATCGTTGTGCTGCTTGAAGGACTACGATCTGA
GCACCCAGATCAATCAGTTCGCCATCTCGGACATCGGCGGACTCGATGTC
TTGGTTAACATCCTGGAGTGCAGCGACACCAAGTGCTGTTTGGGCGCCCT
CAAAGTTCTCTCAGATATCACACTGAACATCGATATTACGAAGACCATCG
TAGATCTGGATGGCATTCCCCTCATTGTGGACATCCTAAACTCTTCCATG
AAGGACCTAAAAACCATGGCCGCCGAGACATTGGCCAATGTGTGCAAGTG
CGACTGGCCAGAAGTATTGTGCGCACCTGCGAGAATCCCCAAGCTGTGAT
CTCATCGACATCAGTGGAGCATTCTAAAGACGCCCTCGTGACCAATGGTC
AAATGATCTGAATTTTCTCGAATAGACCGCGCCTGGAGCCCGGCTCTTTT
CATCTGCGATCAGCC

FMO10944.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
gudu-RA 2252 CG5155-RA 169..871 9..702 3020 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7388676..7389285 9..613 2765 98 Plus
Blast to na_te.dros performed 2014-11-27 20:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 862..920 211..270 108 66.7 Plus

FMO10944.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:22 Download gff for FMO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5155-RA 137..799 2..660 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:48 Download gff for FMO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5155-RA 166..828 2..660 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:50 Download gff for FMO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
gudu-RA 166..828 2..660 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:50 Download gff for FMO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7388673..7389292 2..619 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:48 Download gff for FMO10944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7388673..7389292 2..619 97 -> Plus