FMO10945.5prime Sequence
1040 bp (977 high quality bases) assembled on 2011-11-18
> FMO10945.5prime
CAGTCGACATGGGTAAATTAAACGTGACAGTGCTGCGATATCTCACCAAA
GAGGACTTCCGCGTCCTCACCGCCATCGAGATGGGCATGAAGAACCACGA
GCTGGTCCCTGGTCCCCTGGCTGCTGCCATTGCGAATCTGAAGTCGGGTG
GAGTCCACAAGCTGCTCAAGGAGCTGTGCAAGCACAAGCTATTGGCCTAC
GAACGGGGAAAGAAATATGATGGCTACCGCTTGACAAACACGGGCTACGA
CTATCTGGCTCTGAAGTCTCTCACACTGCGGGGATCGGTCAGTTCCTTTG
GCAACCAGATTGGAATTGGCAAGGAGTCCAACATCTACGTGGTGGCTGAT
GAGGAGGGCACTCCAATTTGCCTCAAACTACACCGATTGGGTCGAACTTG
TTTCAGGAATGTAAAAGCCAAAAGAGACTACCACGGTCGCCGACACAAGG
CCTCCTGGTTGTACTTATCTCGCATCTCGGCTACCCGCGAGTTTGCCTAC
ATGTCGGCACTCTATGATCGTGGGTTTCCAGTGCCAAAACCCATCGATTT
CAACCGCCACTGCGTCTTAATGGACCTCGTCAAGGGCTGGCCCATGACCC
AAGTTCACGAACTTCTAGACGCTCCACAAGTTTACGATGATCTTATGAAC
CTTATTGTGCGTCTGGGAAATTCTGGAGTTATTCATGGCGATTTTAATGA
GTTTAATTTAATGGTGACAGACGCCGGCAAGCCCATACTGATTGATTTCC
CTCAGATGATGTCCACCTCGCATGAAAATGCAGAATTTTTCTTCGAACGC
GATGTTAACTGCGTGCGTGAAATGTTCCGTCGCAAATTTGGTTACGAAAG
CGAAGACTACCCCAAGTTCAGCGACCTGTGCGTGAGGATGATTTGGATGC
CGAGGTACATTGCACAGGCTATGGCTTCCTAAGAGATGGACCAGGATCTT
CTGGAGGAGTACGGCATGGTGGATCAGGCCGAATGAGGAGATGGAGGGAG
AAAGGATTTTGGAAGAAGAGGAAAACCCCTCCAACCTGTG
FMO10945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK2-RA | 1751 | CG11859-RA | 64..1077 | 9..1023 | 4820 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25266171..25266550 | 217..596 | 1900 | 100 | Plus |
| 3R | 32079331 | 3R | 25265907..25266114 | 9..216 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 25266602..25266793 | 596..787 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 25266849..25267043 | 788..979 | 795 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:07 has no hits.
FMO10945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:34 Download gff for
FMO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11859-RA | 64..1058 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:59 Download gff for
FMO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11859-RA | 64..1058 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:44 Download gff for
FMO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK2-RA | 64..1058 | 9..1001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:44 Download gff for
FMO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25266602..25266793 | 596..787 | 100 | -> | Plus |
| 3R | 25266849..25267076 | 788..1015 | 94 | -> | Plus |
| 3R | 25266171..25266549 | 217..595 | 100 | -> | Plus |
| 3R | 25265907..25266114 | 9..216 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:59 Download gff for
FMO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21091629..21091836 | 9..216 | 100 | -> | Plus |
| arm_3R | 21091893..21092271 | 217..595 | 100 | -> | Plus |
| arm_3R | 21092324..21092515 | 596..787 | 100 | -> | Plus |
| arm_3R | 21092571..21092798 | 788..1015 | 94 | -> | Plus |
