FMO10946.5prime Sequence
1063 bp (962 high quality bases) assembled on 2011-11-18
> FMO10946.5prime
CAGTCGACATGAAAGTGGTCGGCAGTTTGCATATCCTCTATTCGCTGGCG
ATCTTAGTATCCCTACATTCTCTCGTCGCGGGAAACTCTTCGGTGGTGGC
GGTGACCCACGAAAACTTGCAAGGAATAATCGATTCTAATGAGTTGGTTC
TGCTTAGTTTTTACACGGATTGGTGCCGTTTTAGCCAGATTTTGCAGCCC
ATTTTTGAGGAGGCGGCGGCGAAGGTTATACAGAAATTCCCTGAAAACGG
CCGTGTGATCCTGGGAAAAGTAAACTGCGACACTGAAGATATATTGGCCG
ATCAGTTTGACATACTTAAGTACCCAACGATAAAGATCGTCAGGAATGGA
TTGATTGGCAATCAGGAATACCGTGGCCAGAGATCGGTGGAGGCCCTTTT
CCAGTTCGTGGAAAAGGAGCTATCAGATCCAATCAAAGAGTTCCATAACA
TTGATGACCTTAAAAACGTGGATGTTGGGTATGGAATAGTCATTGGTTAT
TTCATTTCCAAGGATCATGCTGAGTATGATAACTATCGCAGGGTAGCGAG
CCTTTTGCGCAACGATTGTAGGTTCCTTGTGGGCTTTGGTGACTTGACTA
AGGACCTCCGACCGCCAGGAAAGAACGCGTTGATCTTCCGAGGCGATCCA
TCGATTCCGAATCACAAAAACCAGTACAGTGAGTACTTGGGCAACATGAC
CAGCTTTAAAGAACTAACCTTTTGGATCGATAAGACGTGTGTGCCCCCTG
GTGCGAGAGGTCACCTTCGATAATGCAGAGGAACTATCGGAGGAAGGATT
TACCATTTGTATTGCTATTTTACAACAAGGACGATCTAAGTCCCATCCAG
GAGTTCAGATCGCATTCAAAGCAGGATGGAAAATGAGACGAGGGTTATTT
TCTGACTGCCGAGGAAAGTCTTAAGCACCACTTTTCATTGGGAAAGTCCC
CGAGTTGATTGGCAGTGGTCCGAAATGAATTCCTTCAGCACTGTACTATT
TCCCCGCTTCCGAGGACTTTTACCGAATCCAGGTGCCCCCTCAAAAATTC
TTGAGATGAACCG
FMO10946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10029-RB | 1665 | CG10029-RB | 39..1081 | 9..1047 | 4555 | 96.9 | Plus |
| CG10029-RA | 1380 | CG10029-RA | 39..1081 | 9..1047 | 4555 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7316605..7317169 | 573..9 | 2810 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7316161..7316504 | 912..570 | 1435 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:14 has no hits.
FMO10946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:34 Download gff for
FMO10946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..992 | 1..955 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:03 Download gff for
FMO10946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..992 | 1..955 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:48 Download gff for
FMO10946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..992 | 1..955 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:48 Download gff for
FMO10946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7316031..7316502 | 572..1037 | 93 | <- | Minus |
| 3R | 7316607..7317177 | 1..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:03 Download gff for
FMO10946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3141753..3142224 | 572..1037 | 93 | <- | Minus |
| arm_3R | 3142329..3142899 | 1..571 | 99 | | Minus |
