FMO10948.5prime Sequence
1092 bp (955 high quality bases) assembled on 2011-11-18
> FMO10948.5prime
CAGTCGACATGGCCGGGAGAAGGGTGATTGGTCTCTGTTTTGGAATATTC
TTACAAGTGCTGCTAGCGACTGCTGGACAGGATCGGATGAGCATGCTCTG
TTCCGACGACGACACACCAGCCTGTGCCCAGAGCCGCGAAAATGGAATGT
ACTTTTTGTTCGCCAACGAGTGTGACCTTCGGAAGGCCCAGCGTGGCAAC
CTCATGAATGGCCCTCTATATGACGTTACGCTTCGATTCTGCTTTCCCAG
CTGCGAATTCGAGTGCAGCTCAAGATATCAGCCAGTTTGTGGCATCAGCT
CGAAGTCGGGGGAACGAAAGACCTTCAGGAGTCGCTGCGAAATGCTGCGA
ACCGCTTGCATCTCAAGGTCGGAGTGGATGGTCCATCGATGGGGAGTGTG
TCCAAAAGCCAACGCGGTGCCACAGATCAGTGAAAAGCCGCCTGTGCCCG
TGCCCTGCACCAGGATCTATCGACCTGTTTGCGCCATGTACGCTGGTGTC
AAGTCAACCTTCTCCAACGAGTGTTTGGTGAACGCGGAAAACATCAAGTC
CCAGAGAAACTGGCGCATCGTTTCCGAGGGCCTTTGTGGCGAGGACAGCA
CCAAGATGAAGCATAGTCGCAAGCAGAAGCCGAAGGCCAAGCCCAAGTCG
GATGCGGAGCGCACCAAGCGGAGCCACAGAGGCAAGAGGCTGTCCACTCA
GGCGGAAGACTTCCAGATACCGGAGGACGCCGTGAGATTTACGCTCCCTC
GACCTTTCACACGCAGTTCATCAGCCAATCGGGCGCCATGGAGAAGAGCT
ACTCTCTGCCCGCCAGGAAGCCCTATGTGGTGGTCCCGCCTAAATCGAAG
CGGCGAATCCCCACAAGTCTTGTGTTTTCTGCAATGAGCTGTTTGCGGGA
ACTTATGAGGGCAGAGTCGCACCTTTTCTACGTTTGTGACTCATGGAGTT
TAGCCACAAGTCGGAAATGCATGGACCATTGCTCACATGGAGCCGGTCGC
CGCTGCGATAGACTTGTCCTACGGTTATCACCTATTTGTGCCACCAGAAC
GGCATCATTCAACATCCGTCACGATGTCTATTTGGAGCGAGT
FMO10948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1077-RA | 2302 | CG1077-RA | 34..1132 | 7..1092 | 5005 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6168368..6168784 | 559..969 | 1725 | 97.6 | Plus |
| 3R | 32079331 | 3R | 6167884..6168222 | 220..558 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 6167516..6167732 | 7..223 | 1070 | 99.5 | Plus |
| 3R | 32079331 | 3R | 6168955..6169039 | 969..1049 | 210 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:31 has no hits.
FMO10948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:36 Download gff for
FMO10948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 1..1097 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:11 Download gff for
FMO10948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 29..1132 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:53 Download gff for
FMO10948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 29..1132 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:53 Download gff for
FMO10948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6167511..6167728 | 1..219 | 98 | -> | Plus |
| 3R | 6167884..6168222 | 220..558 | 100 | -> | Plus |
| 3R | 6168368..6168784 | 559..969 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:11 Download gff for
FMO10948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1993233..1993450 | 1..219 | 98 | -> | Plus |
| arm_3R | 1993606..1993944 | 220..558 | 100 | -> | Plus |
| arm_3R | 1994090..1994506 | 559..969 | 97 | -> | Plus |
