Clone FMO10953 Report

Search the DGRC for FMO10953

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9203-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10953.5prime Sequence

1096 bp (983 high quality bases) assembled on 2011-11-18

> FMO10953.5prime
CAGTCGACATGTCAGATGCAGACTACTTGTTCGCTCTGAACCTGCAGAAC
CAGCTAAATGCGGAGTCAGACCAAAGTTACACAGCCGCGGATGCCAGCAA
TGACAGGGACTATCAGCTGGCACGCAGGATTCAGAACCTAATAAACGAGG
GCGATGAGGACGGTGCTAGCGAGCTGGACAGCAGCATTCAGTTCGTCTAC
CCCAAATCGAATCAGCCAAAATCAACAAAAATGGAGAACTCTGAAATCAA
AAACAAAAAACGAGAAGCGGCTAAAAAGAAGCCAGTGCGCGCTATTCAGG
CCAGCCATGATGACTATCTGAATAAGACGATGAATCTGGTGGATCCGGAG
TGGGAGCTGGTCGATCCCACCCCGGACATCTACGCCATGTTCATACGCTT
CGACGAGAAGTTCTTCCAGGAGCGCCTGGGCGCCGTCTCCCTGGAATGGA
GCAAGAAGATGTACTCGTGCGCTGGAATCTGCTACCAGCGTGGCAATCGC
TTCGTCAAACAGGTGACCATTCGGCTCAGTGAGCCGCTGCTAAAGTTGCG
TCCGCGCAAGGATCTCGTGGAAACGCTCTTGCACGAAATGATCCATGCCT
ACTGCTTTGTGCTCAATATACGCGAGGGTAACGGTGGCCATGGACCCAAT
TTCAAGCGCATCATGGAGACGATCAATAAGGTGGCGGGCACCAACATCAC
CGTTTACCACACTTTTCACGATGAGGTGGCCTCCTATCGCACCCACATCT
GGCGCTGCACGGGCATTTGCCGAGAGCGCTCACCCTTTTGGGGCTATGTG
AAGCGGACCAGCAACCGAGCGCCCGGTCCGAACGATCAGTGGTGGAAGAT
GCATCACGTGAGTGCAGCGGCACCTTTTTGAAGTTGAGTGAACCCCCGAA
GGCCCCAAGCCGGAGACCAAGTCAGGGCTAGAGTCCACACCGGGCGGTGG
CCGCGCCCAAGAGACATACGCACTGGTTCGGCCAGCGTCAGCCCAGGAAG
CGGCCACCGGCACAGTCTTACTAGGCGATCTGGCGAAGGCGGTGCCGCCG
GACTTCTAACCGACTCTCTTCGATCTTGCCATGGCAGAACCCACTG

FMO10953.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-RA 2349 CG9203-RA 84..1157 8..1071 5005 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15474019..15474496 1050..581 1920 97.3 Minus
X 23542271 X 15474603..15474959 581..225 1785 100 Minus
X 23542271 X 15475039..15475161 224..102 615 100 Minus
X 23542271 X 15475223..15475317 102..8 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:28 has no hits.

FMO10953.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:25 Download gff for FMO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9203-RA 54..1134 1..1071 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:05 Download gff for FMO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9203-RA 77..1157 1..1071 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:03 Download gff for FMO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9203-RA 77..1157 1..1071 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:03 Download gff for FMO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15473996..15474495 582..1071 96 <- Minus
X 15474603..15474959 225..581 100 <- Minus
X 15475039..15475161 102..224 100 <- Minus
X 15475224..15475320 1..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:05 Download gff for FMO10953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15368029..15368528 582..1071 96 <- Minus
arm_X 15368636..15368992 225..581 100 <- Minus
arm_X 15369072..15369194 102..224 100 <- Minus
arm_X 15369257..15369353 1..101 96   Minus