Clone FMO10954 Report

Search the DGRC for FMO10954

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:54
Vector:pMK33-CFH-BD
Associated Gene/Transcriptalpha-Est6-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10954.5prime Sequence

1121 bp (1008 high quality bases) assembled on 2011-11-18

> FMO10954.5prime
CAGTCGACATGTGGAAACTCTGTCAGCCGAGAAGTCGAAGTCGGATCAAA
TGTTTCAGATTCCTAATCCTGCGTTGTTGTCCCGGATTCAAGAGATTCTC
GTGCCAATCAGCAGGTGATGCAGACTCCAAAGTCGTCAAGCTATCAGTAG
GGAGTGTCAAGGGTCGTCGACTGAGCGGTATCTATGGTGACGAGTTCTAC
AGCTTCGAGGGAATTCCCTTTGCCAAGCCGCCGCTAGGGAAAGCCCGATT
TGTGGCCTCCCAATTGGCAGACCCATGGAATTCAGAGCTCGATGCTCGGC
AGGAGAGACCGATTCCTCTGCAGATGGACAGAAGGTCGGGAAAGGTCGTT
GGCAGTGAGGATTGCCTGTACTTAAACGTATACACCAAGCATTTTAACGA
ATCTGAGCCACCTCTGCCCGTAATGGTGTATATCTACGGCGGTGCCTTTC
GCACAGGCGGAGCTGTGAAGAGCAAATACGGGCCGGATTACTTGATGAGC
AGGGATGTTGTATATGTGCTATTCAACTATCGCCTCTGCTCCCTGGGATT
CCTTAGTATGCCCAGTGGCAAGTTGGATGTGCCGGGCAATGCGGGTCTCC
ATGATCAGTTACTAGCCCTTCAATGGGTTAGCCAGCACATACGGAACTTC
AACGGAGATCCGCAGAATATAACGCTTTTTGGCGAAAGTGCGGGGGCCGC
CTCGGTGCACTTTATGATGTGTCTGCCGCAGGCGAAGGGTCTCTTCCACA
ATGCCATCATGATGTCCGGATCGATGCTGAGTCCCTGGGTGAATGCTCCC
GATAGCGATGGTATATTCTGCCGCCTGGCCACGTCTGCAGGATACGAAAG
ACCCGCGGAGAGTCCCCATTTTGGAGTTTCTGCGCAACGTGAATGCCGAA
AACTCATCGGCCACGATTTCATCTCACCCCGTGACGTTGCTTTGGGGTTT
CTTAACCCATTTGCCTCCAGTTGTTGGAGGCTGGTTGCAGCCCCGTTTCA
GCAGCTGATGAGGAGCGTGGTTCTGTGAAGTGCCCCTCCTCTTGGGTGGA
CTTCTTCAGGACTGGTTACTACCAATCTGTCAGCTGGAATATGGCCTATG
CTGAACGTTGTAAACATGAAC

FMO10954.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est6-RA 1836 CG1108-RA 58..1167 6..1103 5055 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7525389..7526050 1049..393 2840 97 Minus
3R 32079331 3R 7528334..7528720 392..6 1935 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:35 has no hits.

FMO10954.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:26 Download gff for FMO10954.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est6-RA 54..1167 1..1103 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:10 Download gff for FMO10954.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est6-RA 54..1167 1..1103 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:08 Download gff for FMO10954.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est6-RA 54..1167 1..1103 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:08 Download gff for FMO10954.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7525328..7526050 393..1103 96 <- Minus
3R 7528334..7528722 1..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:10 Download gff for FMO10954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3351050..3351772 393..1103 96 <- Minus
arm_3R 3354056..3354444 1..392 99   Minus