Clone FMO10955 Report

Search the DGRC for FMO10955

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15143-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10955.5prime Sequence

1114 bp (995 high quality bases) assembled on 2011-11-18

> FMO10955.5prime
CAGTCGACATGTCCAAACACAATACACGACTCGATAGGCATGTTAAGTTT
AGGATTCTTCAGGAGGACAGGTTACAATCACCGAGACAAAAAGAGGATAA
TATCAAACGGAAAAAGAGCACTTCCAAATCTGAAAATCTTACTGAACGTG
GCCTATCATCTTGTCTGATCAACAGCTCGGTAGATCTGCGGATCACAGGA
GGTGAGAATGACCCAGCACAGCGCAATGTTGGAAAATTGCCTCGCACCGA
CAGCGAGTGTCAGTTCAAAGCTCCGGGATACCGATTTCTTACCGAACAAG
ATACTACAGTGAACACCCATGAGGTCAAGATGAGCCCCAGGGTAGTGACG
AAAAAGGATTTAAGGCACAAATGTGATTTCTTTGCTAAGAACAAGGACGC
ACGACCGTTTAAGAATAAGATCACGCAGACGCTTTACAGAGAATCCTCTG
CGCAGACAATGGCTTATTTGCCGGAGATTTTTGAAGCAAACAGCGTTGAA
ACCTTGGAACTGTTTTCCCTGCCATCTATATTCCCAGTAGCAAATCGACC
GGGACTCCATGAAGTTGAGATTCTGGAACGCGCCAGGAAACGATGGGCCT
TTAGTGATGCCCTAAAGATTCACTTCAAAAACCTACTTCAAGACGCCAGG
AAAGTGGCGATAAAAACAGAGCTCAAGGAGATTTTGGAGGCCATTGAATG
GGAGCAGTGGATACAGCGTGAGGAGGACATTCAAGAGTGCCAGATGATGC
GTCTCCAGATCGTGATTAAAATGTTTGATAAGCGGGAGAAAGGAGATGCA
CACCGCTTCAAAGACTCGAATCGAAACAGCCTGCGAGCGAATCGAGAAGC
GACGTCATGCGGGTTTGCGAAAAACGAGATCGAGTTCCAACGGGGAATGC
GCCGAATGAGTTCCAACTTACGAAGATCCGCGAAGGTGGGAGAGCAAAGT
CCCATGTACCGCGTTGGGATCACCCAGCTCGAGTTCTTACCCCTCCCGCT
TTAGATCGGCGTGGAATCCGGCGCGTCGCCACTTTTGTGGTTCCAAACCG
GCACCAAAAGCCCTCCGAATATGAAATTCGATGACTTAGAGAAGCGAATC
ACACAATACCGACT

FMO10955.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15143-RA 3513 CG15143-RA 29..1130 9..1114 4955 97.4 Plus
CG15144-RB 3362 CG15144-RB 856..1209 548..901 420 75.3 Plus
CG15145-RA 2787 CG15145-RA 718..926 696..904 295 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17523275..17523947 1114..438 2470 94.6 Minus
2L 23513712 2L 17524007..17524246 439..200 1200 100 Minus
2L 23513712 2L 17524327..17524521 203..9 975 100 Minus
2L 23513712 2L 17527814..17528091 826..548 370 76.3 Minus
2L 23513712 2L 17531226..17531380 851..696 250 78.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:44 has no hits.

FMO10955.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:26 Download gff for FMO10955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15143-RA 25..1130 1..1114 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:14 Download gff for FMO10955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15143-RA 25..1130 1..1114 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:11 Download gff for FMO10955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15143-RA 25..1130 1..1114 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:11 Download gff for FMO10955.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17523275..17523945 440..1114 95 <- Minus
2L 17524007..17524244 202..439 100 <- Minus
2L 17524329..17524525 1..201 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:14 Download gff for FMO10955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17523275..17523945 440..1114 95 <- Minus
arm_2L 17524007..17524244 202..439 100 <- Minus
arm_2L 17524329..17524525 1..201 98   Minus