FMO10955.5prime Sequence
1114 bp (995 high quality bases) assembled on 2011-11-18
> FMO10955.5prime
CAGTCGACATGTCCAAACACAATACACGACTCGATAGGCATGTTAAGTTT
AGGATTCTTCAGGAGGACAGGTTACAATCACCGAGACAAAAAGAGGATAA
TATCAAACGGAAAAAGAGCACTTCCAAATCTGAAAATCTTACTGAACGTG
GCCTATCATCTTGTCTGATCAACAGCTCGGTAGATCTGCGGATCACAGGA
GGTGAGAATGACCCAGCACAGCGCAATGTTGGAAAATTGCCTCGCACCGA
CAGCGAGTGTCAGTTCAAAGCTCCGGGATACCGATTTCTTACCGAACAAG
ATACTACAGTGAACACCCATGAGGTCAAGATGAGCCCCAGGGTAGTGACG
AAAAAGGATTTAAGGCACAAATGTGATTTCTTTGCTAAGAACAAGGACGC
ACGACCGTTTAAGAATAAGATCACGCAGACGCTTTACAGAGAATCCTCTG
CGCAGACAATGGCTTATTTGCCGGAGATTTTTGAAGCAAACAGCGTTGAA
ACCTTGGAACTGTTTTCCCTGCCATCTATATTCCCAGTAGCAAATCGACC
GGGACTCCATGAAGTTGAGATTCTGGAACGCGCCAGGAAACGATGGGCCT
TTAGTGATGCCCTAAAGATTCACTTCAAAAACCTACTTCAAGACGCCAGG
AAAGTGGCGATAAAAACAGAGCTCAAGGAGATTTTGGAGGCCATTGAATG
GGAGCAGTGGATACAGCGTGAGGAGGACATTCAAGAGTGCCAGATGATGC
GTCTCCAGATCGTGATTAAAATGTTTGATAAGCGGGAGAAAGGAGATGCA
CACCGCTTCAAAGACTCGAATCGAAACAGCCTGCGAGCGAATCGAGAAGC
GACGTCATGCGGGTTTGCGAAAAACGAGATCGAGTTCCAACGGGGAATGC
GCCGAATGAGTTCCAACTTACGAAGATCCGCGAAGGTGGGAGAGCAAAGT
CCCATGTACCGCGTTGGGATCACCCAGCTCGAGTTCTTACCCCTCCCGCT
TTAGATCGGCGTGGAATCCGGCGCGTCGCCACTTTTGTGGTTCCAAACCG
GCACCAAAAGCCCTCCGAATATGAAATTCGATGACTTAGAGAAGCGAATC
ACACAATACCGACT
FMO10955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15143-RA | 3513 | CG15143-RA | 29..1130 | 9..1114 | 4955 | 97.4 | Plus |
CG15144-RB | 3362 | CG15144-RB | 856..1209 | 548..901 | 420 | 75.3 | Plus |
CG15145-RA | 2787 | CG15145-RA | 718..926 | 696..904 | 295 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17523275..17523947 | 1114..438 | 2470 | 94.6 | Minus |
2L | 23513712 | 2L | 17524007..17524246 | 439..200 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 17524327..17524521 | 203..9 | 975 | 100 | Minus |
2L | 23513712 | 2L | 17527814..17528091 | 826..548 | 370 | 76.3 | Minus |
2L | 23513712 | 2L | 17531226..17531380 | 851..696 | 250 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:44 has no hits.
FMO10955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:26 Download gff for
FMO10955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15143-RA | 25..1130 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:14 Download gff for
FMO10955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15143-RA | 25..1130 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:11 Download gff for
FMO10955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15143-RA | 25..1130 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:11 Download gff for
FMO10955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17523275..17523945 | 440..1114 | 95 | <- | Minus |
2L | 17524007..17524244 | 202..439 | 100 | <- | Minus |
2L | 17524329..17524525 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:14 Download gff for
FMO10955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17523275..17523945 | 440..1114 | 95 | <- | Minus |
arm_2L | 17524007..17524244 | 202..439 | 100 | <- | Minus |
arm_2L | 17524329..17524525 | 1..201 | 98 | | Minus |