FMO10956.5prime Sequence
1077 bp (995 high quality bases) assembled on 2011-11-18
> FMO10956.5prime
CAGTCGACATGGCTTTAAAAAGGTTGAAGACCAAGAAATCCAAGAGGCTC
ACCGGTCGCTTGAAGCACAAGATCGAAAAGAAGGTGCGGGACCACAACAA
AAAGGAACGTCGCGCAGCCAAGAAGAATCCGAAGAAGGGTAGCAAGAAAC
AGAAGCTCATCCAGATCCCGAACATCTGTCCCTTCAAGGATGACATCCTC
AAGGAGGTGGAGGAGGCCAAGCAACGTCAGGAGGCCGAACGTTTGGCTCG
CCGCGAAGCCTTTAAGGCGGAACGCGAACAGAACAAGTTCAAGACGCTGG
AGTCCATGGTCGAGGATGCAGACATGCGGAGCACCGTGCACGGAATAATG
CACGAAAACGATGCCCAGGATCAGGACGAAAAGAAGTACAAGAACGCCGT
GACCAAAGAGCAGTCATTGAAGCAGTACTTCAAGGAATTCCGCAAGGTGA
TAGAAAATGCCGACGTTGTCCTGGAGGTGGTTGATGCACGTGACCCCCTG
GGAACCCGCTGCAATGAAGTTGAGCGCGCCGTTCGCGGTGCTCCGGGCAA
CAAGCGACTGGTCCTGGTGCTCAACAAAGCCGACCTGGTGCCGCGAGAGA
ATCTGAACAACTGGATCAAGTACTTCCGTCGCAGCGGACCTGTCACCGCC
TTCAAGGCTTCCACACAGGATCAGGCCAACCGGCTGGGACGCCGCAAACT
CCGCGAAATGAAAACCGAGAAGGCTATGCAGGGTTCTGTCTGTATTGCGC
TGAGTTGCTTATGTCCATGCTGGGCAACTACTGCCGCAACAAGGGCATCA
AAACCTCGATTCGCGTTGGCGTCGTTGGAATTCCCAATGTAGCAAGAGCT
CCATCATAAACTCGTTGACCCGCGGCCGGTCCTGCATGGTGGCAGCACGC
CAGGAGTGACCAAGTCATGCAAGAGTAGACTGGATTCAAAATCAACTGAT
CGATTGTCCTGGAATCGTATTTACCAGCGGAGGTGAAAATCGCATGCAGT
CTGAAAATGCTCAGCGGTGGGGCGATGTTAAGATCCTTCCCCATGCCGAA
GCGAATTGACGTGCACAGAAACTCTCT
FMO10956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns1-RA | 1895 | CG3983-RA | 73..1138 | 9..1059 | 4745 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17071630..17072517 | 915..31 | 4200 | 99 | Minus |
| 3R | 32079331 | 3R | 17071477..17071534 | 1000..944 | 240 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:51 has no hits.
FMO10956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:27 Download gff for
FMO10956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ns1-RA | 180..1233 | 3..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:19 Download gff for
FMO10956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns1-RA | 68..1121 | 3..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:13 Download gff for
FMO10956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns1-RA | 68..1121 | 3..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:13 Download gff for
FMO10956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17071632..17072517 | 31..913 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:19 Download gff for
FMO10956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12897354..12898239 | 31..913 | 98 | <- | Minus |
