FMO10958.5prime Sequence
1109 bp (996 high quality bases) assembled on 2011-11-18
> FMO10958.5prime
CAGTCGACATGGCGGATGAAAAGGCCAAGGAATCCTTCCGCGAGCGGCAA
GCGCAGGAGTTGGAGGTTATAAAGTCCATCTTTGGCTGTGATGTGGAGGA
CCTAAGACCCCAGGCGAATCCTTCCCTGTGGAAGCCAACGGACATACGGA
TACAACTTACCCCACTTCGAGACTCCTCGAACGGACTGGAAACCTATGTG
TGCACCAAGCTGCACGTCACCTGTCCATCAAAGTATCCAAAATTGCCCCC
TAAGATATCTCTGGAGGAGTCCAAAGGCATGTCGGATCAGCTGCTGGAGG
CCCTACGCAACCAATTGCAGGCTCAATCCCAAGAGCTACGTGGCGAAGTG
ATGATTTATGAATTGGCCCAGACCGTTCAGGCCTTTCTCCTCGAACACAA
CAAACCACCAAAGGGATCATTCTACGACCAGATGCTCCAGGATAAACAGA
AGCGCGACCAGGAGCTACAGGACATACAGCGGCAGCGGGAGTCCCTGCAA
CGCCAGACGCTCATCGACGAGGTGGAGCGGCGCAAAGAGATGTTCAAAAC
GGAGGCTAAGAGGCGCGGCGAACCAAGGCGCAGCATGAGTGAGTCTAACC
CACGGCATCCTAGCTCGTCGGAGAGCTCCGAGAACTCCTCGCCCTACTAT
CGTGGTCACATCTACCCCTCCAAATGCCTGGATCACCGCAACACGGAGAC
GCTCTACTTCCACAAGATGGGCAGGCAGATTCAGCGTGGATGCTGCGTTG
GTCACTCCCAACGAGGTTGCATCGCCTACACTGGCATAGATATGCACTGC
GGCCAGTTGCTCTACATAACAGAATGAAACATCAAGTACAGCCAACTGGA
GCAGCCATGCATCGGCGGAGCAAGTGCCACTGGAGCAGCGAGTCAAAGTG
CATGGGCAGTCATCGTGGTGAACGAAATGATGGCCTCCATTGAAAAGCAA
GTGTCCTCCACTGTCCCAACTACAGCACAAAAACCTTCGTCTCCGTACGA
GTGGCGTAACTGTGCATCAAGCGAAGAAGTCTAACTTGTGTATTGTTCCA
AGAACTTCTCTCTTGCACCACCTGTTCAGCATCTCCTCCTCCATGCTGTG
CCATGGACA
FMO10958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gcn2-RB | 5284 | CG1609-RB | 332..1413 | 9..1091 | 4935 | 97.8 | Plus |
Gcn2-RA | 5737 | CG1609-RA | 332..1413 | 9..1091 | 4935 | 97.8 | Plus |
Gcn2-RC | 5290 | CG1609-RC | 332..1419 | 9..1091 | 4865 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31396402..31396909 | 245..752 | 2525 | 99.8 | Plus |
3R | 32079331 | 3R | 31396985..31397220 | 750..986 | 980 | 97.1 | Plus |
3R | 32079331 | 3R | 31396121..31396293 | 73..245 | 865 | 100 | Plus |
3R | 32079331 | 3R | 31395991..31396056 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:53 has no hits.
FMO10958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:38 Download gff for
FMO10958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gcn2-RA | 329..1434 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:23 Download gff for
FMO10958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gcn2-RA | 327..1432 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:01 Download gff for
FMO10958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gcn2-RA | 327..1432 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:01 Download gff for
FMO10958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31395986..31396056 | 1..74 | 94 | -> | Plus |
3R | 31396123..31396292 | 75..244 | 100 | -> | Plus |
3R | 31396402..31396907 | 245..750 | 99 | -> | Plus |
3R | 31396986..31397344 | 751..1108 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:23 Download gff for
FMO10958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27221708..27221778 | 1..74 | 94 | -> | Plus |
arm_3R | 27221845..27222014 | 75..244 | 100 | -> | Plus |
arm_3R | 27222124..27222629 | 245..750 | 99 | -> | Plus |
arm_3R | 27222708..27223066 | 751..1108 | 92 | | Plus |