Clone FMO10958 Report

Search the DGRC for FMO10958

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:58
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGcn2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10958.5prime Sequence

1109 bp (996 high quality bases) assembled on 2011-11-18

> FMO10958.5prime
CAGTCGACATGGCGGATGAAAAGGCCAAGGAATCCTTCCGCGAGCGGCAA
GCGCAGGAGTTGGAGGTTATAAAGTCCATCTTTGGCTGTGATGTGGAGGA
CCTAAGACCCCAGGCGAATCCTTCCCTGTGGAAGCCAACGGACATACGGA
TACAACTTACCCCACTTCGAGACTCCTCGAACGGACTGGAAACCTATGTG
TGCACCAAGCTGCACGTCACCTGTCCATCAAAGTATCCAAAATTGCCCCC
TAAGATATCTCTGGAGGAGTCCAAAGGCATGTCGGATCAGCTGCTGGAGG
CCCTACGCAACCAATTGCAGGCTCAATCCCAAGAGCTACGTGGCGAAGTG
ATGATTTATGAATTGGCCCAGACCGTTCAGGCCTTTCTCCTCGAACACAA
CAAACCACCAAAGGGATCATTCTACGACCAGATGCTCCAGGATAAACAGA
AGCGCGACCAGGAGCTACAGGACATACAGCGGCAGCGGGAGTCCCTGCAA
CGCCAGACGCTCATCGACGAGGTGGAGCGGCGCAAAGAGATGTTCAAAAC
GGAGGCTAAGAGGCGCGGCGAACCAAGGCGCAGCATGAGTGAGTCTAACC
CACGGCATCCTAGCTCGTCGGAGAGCTCCGAGAACTCCTCGCCCTACTAT
CGTGGTCACATCTACCCCTCCAAATGCCTGGATCACCGCAACACGGAGAC
GCTCTACTTCCACAAGATGGGCAGGCAGATTCAGCGTGGATGCTGCGTTG
GTCACTCCCAACGAGGTTGCATCGCCTACACTGGCATAGATATGCACTGC
GGCCAGTTGCTCTACATAACAGAATGAAACATCAAGTACAGCCAACTGGA
GCAGCCATGCATCGGCGGAGCAAGTGCCACTGGAGCAGCGAGTCAAAGTG
CATGGGCAGTCATCGTGGTGAACGAAATGATGGCCTCCATTGAAAAGCAA
GTGTCCTCCACTGTCCCAACTACAGCACAAAAACCTTCGTCTCCGTACGA
GTGGCGTAACTGTGCATCAAGCGAAGAAGTCTAACTTGTGTATTGTTCCA
AGAACTTCTCTCTTGCACCACCTGTTCAGCATCTCCTCCTCCATGCTGTG
CCATGGACA

FMO10958.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gcn2-RB 5284 CG1609-RB 332..1413 9..1091 4935 97.8 Plus
Gcn2-RA 5737 CG1609-RA 332..1413 9..1091 4935 97.8 Plus
Gcn2-RC 5290 CG1609-RC 332..1419 9..1091 4865 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31396402..31396909 245..752 2525 99.8 Plus
3R 32079331 3R 31396985..31397220 750..986 980 97.1 Plus
3R 32079331 3R 31396121..31396293 73..245 865 100 Plus
3R 32079331 3R 31395991..31396056 9..74 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:48:53 has no hits.

FMO10958.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:38 Download gff for FMO10958.5prime
Subject Subject Range Query Range Percent Splice Strand
Gcn2-RA 329..1434 1..1108 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:23 Download gff for FMO10958.5prime
Subject Subject Range Query Range Percent Splice Strand
Gcn2-RA 327..1432 1..1108 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:01 Download gff for FMO10958.5prime
Subject Subject Range Query Range Percent Splice Strand
Gcn2-RA 327..1432 1..1108 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:01 Download gff for FMO10958.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31395986..31396056 1..74 94 -> Plus
3R 31396123..31396292 75..244 100 -> Plus
3R 31396402..31396907 245..750 99 -> Plus
3R 31396986..31397344 751..1108 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:23 Download gff for FMO10958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27221708..27221778 1..74 94 -> Plus
arm_3R 27221845..27222014 75..244 100 -> Plus
arm_3R 27222124..27222629 245..750 99 -> Plus
arm_3R 27222708..27223066 751..1108 92   Plus